View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_9 (Length: 345)
Name: NF10621_low_9
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 49016779 - 49016643
Alignment:
| Q |
196 |
ctaacaagggagagcaggtgtttaatttaagaaatgtatttatgaactacattgtcgtgaaatcttggagattatgcctcgctataaccatcaacaggcc |
295 |
Q |
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| T |
49016779 |
ctaacaagggagagcaggtgtttaatttaagaaatgtatttatgaactacattgtcgtgaaatcttggagattatgcctcgctataaccatcaacaagcc |
49016680 |
T |
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| Q |
296 |
actctatcatagctcgtccttggtatgtttttcttct |
332 |
Q |
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| T |
49016679 |
actctatcatagctcgtccttggtatgtttttcttct |
49016643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 28853294 - 28853416
Alignment:
| Q |
19 |
atttcacatgcacctaatttaacacattcatataacttcatatcaccaggtgaatattg-tttgnnnnnnnnacacaaacgagctaaatattggtggaaa |
117 |
Q |
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| T |
28853294 |
atttcacatgcacctaatttaacacgttcatataacttcatatcaccaggtgaatattgtttttttttttttacacaaacgagctaactattggtggaaa |
28853393 |
T |
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| Q |
118 |
tatgttctttatataaatttgtg |
140 |
Q |
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| T |
28853394 |
tatgttctttatacaattttgtg |
28853416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 49023432 - 49023370
Alignment:
| Q |
19 |
atttcacatgcacctaatttaacacattcatataacttcatatcaccaggtgaatattgtttg |
81 |
Q |
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| T |
49023432 |
atttcacatgcacctaatttaacacattcatataacttcatatcaccaggtgaatattgtttg |
49023370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 20129215 - 20129154
Alignment:
| Q |
19 |
atttcacatgcacctaatttaacacattcatataacttcatatcaccaggtgaatattgttt |
80 |
Q |
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| T |
20129215 |
atttcacatgcacctaatttaacacattcatataacttcatatcaccaggtgaatattgttt |
20129154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 49017160 - 49017105
Alignment:
| Q |
126 |
ttatataaatttgtggatagtcataataagataagtgcatcataacatactcaata |
181 |
Q |
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| T |
49017160 |
ttatacaaacttgtggatagtcataataagataagtgcatcataacatactcaata |
49017105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 20129128 - 20129078
Alignment:
| Q |
90 |
acacaaacgagctaaatattggtggaaatatgttctttatataaatttgtg |
140 |
Q |
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| T |
20129128 |
acacaaacgagctaaatattggtggaaatatgttctatatacaattttgtg |
20129078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 49018472 - 49018428
Alignment:
| Q |
96 |
acgagctaaatattggtggaaatatgttctttatataaatttgtg |
140 |
Q |
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| T |
49018472 |
acgagctaaatattggtggaaatatgttctttatacaattttgtg |
49018428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 7415652 - 7415617
Alignment:
| Q |
146 |
tcataataagataagtgcatcataacatactcaata |
181 |
Q |
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| T |
7415652 |
tcataataagataagtgcaccataacatactcaata |
7415617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 7426596 - 7426564
Alignment:
| Q |
149 |
taataagataagtgcatcataacatactcaata |
181 |
Q |
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| T |
7426596 |
taataagataagtgcaccataacatactcaata |
7426564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 55211811 - 55211856
Alignment:
| Q |
136 |
ttgtggatagtcataataagataagtgcatcataacatactcaata |
181 |
Q |
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| T |
55211811 |
ttgtgcatattcataataagataagtgcaccctaacatactcaata |
55211856 |
T |
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