View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10622_low_1 (Length: 402)
Name: NF10622_low_1
Description: NF10622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10622_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 42813902 - 42814264
Alignment:
| Q |
19 |
catcaaattaatccccattcatgcgcctgtactcttggtacttcttttcctactattagattagatccatgcactgttctttccttttatgcctgactat |
118 |
Q |
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| T |
42813902 |
catcaaattaatccccattcatgcgcctgtactcttggtacttcttttcctactattagattagatccatgcactgttctttccttttatgcctgactat |
42814001 |
T |
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| Q |
119 |
tttcaatagcatgagagatggacatttatacagtggtaccagctagttagataaaagactttgatgttaaactccctcattattattgctgtcattatag |
218 |
Q |
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| T |
42814002 |
tttcaatagcatgagagatggacatttatacagtggtaccagctagttagataaaagactttgatgttaaactccctcattattattgctgtcattatag |
42814101 |
T |
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| Q |
219 |
ttaagaatgattcnnnnnnnnnnnnnnctgagtgaataatttagccaccaactccaacggttcagtaaaagaaactagccttactcttaatggtaatgtt |
318 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42814102 |
ttaagaatgattc------ttttttttctgagtgaataatttagccaccaactccaacggttcagtaaaagaaactagccttactcttaatggtaatgtt |
42814195 |
T |
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| Q |
319 |
tttcaagtcatacaagtgttcaatgccactaaagttaagttctaatgtctctttatatgtgaagatggt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42814196 |
tttcaagtcatacaagtgttcaatgccactaaagttaagttctaatgtctctttatatgtgaagatggt |
42814264 |
T |
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