View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10622_low_3 (Length: 353)
Name: NF10622_low_3
Description: NF10622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10622_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 28873761 - 28874097
Alignment:
| Q |
17 |
agataagactaattctaactaaaatgaattactaatccaataacactaaagaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28873761 |
agataagactaattctaactaaaatgaattactaatccaataacactaaagaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaa |
28873860 |
T |
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| Q |
117 |
taaggttgattcaaccgtaagtacttgaatttgactttaactagaacagtccttgatcaaactctacttacctctcagtcaaaattcagattatcatagc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28873861 |
taaggttgattcaaccgtaagtacttgaatttgactttaactagaacagtccttgatcaaactctacttacctctcagtcaaaattcagattaccatagc |
28873960 |
T |
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| Q |
217 |
cctttctcctaggaaataggaggtttagaaaaataaaaagaacacaggttgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcgttt |
316 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28873961 |
cctttctcctaggaaatagaaggtttagaaaaataaaaagaacacaggttgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcattt |
28874060 |
T |
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| Q |
317 |
caaatttgagcatattgttccataactaatgttctct |
353 |
Q |
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| T |
28874061 |
caaatttgagcatattgttccataactaatgttctct |
28874097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 59 - 353
Target Start/End: Original strand, 28858466 - 28858756
Alignment:
| Q |
59 |
acactaaagaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaact |
158 |
Q |
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| T |
28858466 |
acactaaacaacattaatgtaaatc----aagacatcagatggttaatgaacttcagataaggttgattcaaccgtaagtacttgaattcaactttgact |
28858561 |
T |
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| Q |
159 |
agaacagtccttgatcaaactctacttacctctcagtcaaaattcagattatcatagccctttctcctaggaaataggaggtttagaaaaataaaaagaa |
258 |
Q |
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| T |
28858562 |
ggaacaatccttgatcaaactttacttacctctcagtcaaaattcagattatcacagccctttctcctaggaaacggaaggtttagaaaaataaaaagag |
28858661 |
T |
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| Q |
259 |
cacaggttgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcgtttcaaatttgagcatattgttccataactaatgttctct |
353 |
Q |
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| T |
28858662 |
cacaggctgcagaagagccaaggcgccaaatccaagccttacacattaatgctcattccaaatttgagcattttgttccataactaatgctctct |
28858756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 28872316 - 28872354
Alignment:
| Q |
17 |
agataagactaattctaactaaaatgaattactaatcca |
55 |
Q |
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| T |
28872316 |
agataagactaattctaaataaaatgaattactaatcca |
28872354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 44968873 - 44968908
Alignment:
| Q |
17 |
agataagactaattctaactaaaatgaattactaat |
52 |
Q |
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| T |
44968873 |
agataagactaattctaactaaaatgaattaataat |
44968908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 369309 - 369350
Alignment:
| Q |
17 |
agataagactaattctaactaaaatgaattactaatccaata |
58 |
Q |
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|||||| |||||||||||||||||||||||||| | |||||| |
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| T |
369309 |
agataaaactaattctaactaaaatgaattacttaaccaata |
369350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 367460 - 367492
Alignment:
| Q |
17 |
agataagactaattctaactaaaatgaattact |
49 |
Q |
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| T |
367460 |
agataaaactaattctaactaaaatgaattact |
367492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 12221797 - 12221838
Alignment:
| Q |
17 |
agataagactaattctaactaaaatgaattactaatccaata |
58 |
Q |
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|||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
12221797 |
agataaaactaattccaactaaaatgaattactaaaccaata |
12221838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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