View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10622_low_5 (Length: 294)
Name: NF10622_low_5
Description: NF10622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10622_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 11073293 - 11073576
Alignment:
| Q |
1 |
ttggataaacacattatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggttgcgatgat |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11073293 |
ttggataaacaccttatttttctgcagctttacatggcagggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggctgcgatgat |
11073392 |
T |
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| Q |
101 |
cttcagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtattgaaataatggatgcaaatagtacatccaaattgt |
200 |
Q |
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| T |
11073393 |
cttcagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtattgaaataatggatgcaaatagtacatccaaattgt |
11073492 |
T |
|
| Q |
201 |
aatttttctcatggttcatgagttgaaataatacaaatatatttatttgaatgaagtttggtagtgtgctttgccctacctttg |
284 |
Q |
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| T |
11073493 |
aatttttctcatggttcatgagttgaaataatacaaatatatttatttgaatgaagtttggtagtgtgctttgcactacctttg |
11073576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 7846778 - 7847060
Alignment:
| Q |
1 |
ttggataaacacattatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggttgcgatgat |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
7846778 |
ttggataaacaccttatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggctgcaatagc |
7846877 |
T |
|
| Q |
101 |
cttcagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtattgaaataatggatgcaaatagtacatccaaattgt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | | |
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| T |
7846878 |
ctccagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtgttgaaataatggatgcaaacagtacatccaaaattt |
7846977 |
T |
|
| Q |
201 |
aatttttctcatggttcatgagttgaaataatacaaatatatttatttgaatgaagtttggtagtgtgctttgccctacctttg |
284 |
Q |
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| T |
7846978 |
aa-ttttctcatggttcatgagttgaaataatacaaatatatttatttgaatgaagtttggtagtgtgctttgcactacctttg |
7847060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11059618 - 11059854
Alignment:
| Q |
1 |
ttggataaacacattatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggttgcgatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
11059618 |
ttggataaacacattatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggctgcaatagc |
11059717 |
T |
|
| Q |
101 |
cttcagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtattgaaataatggatgcaaatagtacatccaaattgt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
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| T |
11059718 |
ctccagtggaaaatgaatagaactggtggatctaaatggggccagtggtatccttggaaaagtattgaaataatggatgtaaatagtacatcgaagttgt |
11059817 |
T |
|
| Q |
201 |
aatttttctcatggttcatgagttgaaataatacaaat |
238 |
Q |
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|| ||||||||||||||||| |||||||||||||||| |
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| T |
11059818 |
aa-ctttctcatggttcatgacttgaaataatacaaat |
11059854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 11041221 - 11041020
Alignment:
| Q |
1 |
ttggataaacacattatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggttgcgatgat |
100 |
Q |
| |
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||||| |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |
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| T |
11041221 |
ttggaaaaacacgttattcttctgcagttttacatggcaaggaagtccatatcgtcattatattgaaatttacagtcaaaaacgagatgggtgcaatagc |
11041122 |
T |
|
| Q |
101 |
cttcagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtattgaaataatggatgcaaatagtacatccaaattgt |
200 |
Q |
| |
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|| |||||||||||||||| ||||||||||| ||||| |||| ||| |||||||||| ||| ||||||||||| |||||||| |||||||||| |||| |
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| T |
11041121 |
ctccagtggaaaatgaataaaactggtggatttaaatcggggcagttctatccttggagtagtgttgaaataatgcatgcaaatggtacatccaagttgt |
11041022 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
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|| |
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| T |
11041021 |
aa |
11041020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 10999886 - 11000067
Alignment:
| Q |
11 |
acattatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggttgcgatgatcttcagtgga |
110 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| ||| |||||||||||||||| |||| | |||||||||||| ||| | || |||||| |
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| T |
10999886 |
acattattcttctgcagctttacatggtcaggaaatcctaatcgtcattatattgaagtttataagcaaaaacgagatatttgtcacaattgcgagtgga |
10999985 |
T |
|
| Q |
111 |
aaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtattgaaataatggatgcaaatagtacatc |
192 |
Q |
| |
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|||| |||| ||||||||||| | ||||||||||| | ||||||||| ||| || ||||||||| |||||||| |||||| |
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| T |
10999986 |
aaataaataaaactggtggatatttatgggggaagttttttccttggaatagtgttcaaataatgggtgcaaataatacatc |
11000067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 5922314 - 5922265
Alignment:
| Q |
23 |
tgcagctttacatggcaaggaagtccatatcgtcattatattgatattta |
72 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
5922314 |
tgcagctttacatggaaaggaagtccatatcgtcattatcttgatattta |
5922265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 10973474 - 10973646
Alignment:
| Q |
1 |
ttggataaacacattatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgatatttacagtcaaaaacgagatggttgcgatgat |
100 |
Q |
| |
|
||||| || ||||||||| || ||||||||||| |||| ||||| ||| |||||||||||||||| |||| | |||| ||||||||| || || | |
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| T |
10973474 |
ttggaaaagcacattattcttttgcagctttacgtggccaggaaatcccgatcgtcattatattgaagtttataagcaaagacgagatggatgtgaaaac |
10973573 |
T |
|
| Q |
101 |
cttcagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtattgaaataa |
173 |
Q |
| |
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| |||||||||||| || ||||||||||| | ||||||| ||| ||||||||||| ||| ||||||||| |
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| T |
10973574 |
cgcgagtggaaaatgattaaaactggtggatatttatgggggcagttttatccttggaatagtgttgaaataa |
10973646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 5931445 - 5931396
Alignment:
| Q |
23 |
tgcagctttacatggcaaggaagtccatatcgtcattatattgatattta |
72 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
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| T |
5931445 |
tgcagctttacatggaaaggaagtccatatcatcattatcttgatattta |
5931396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 11040734 - 11040706
Alignment:
| Q |
205 |
tttctcatggttcatgagttgaaataata |
233 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
11040734 |
tttctcatggttcatgagttgaaataata |
11040706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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