View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10623_1 (Length: 607)
Name: NF10623_1
Description: NF10623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10623_1 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 437 - 579
Target Start/End: Original strand, 22080890 - 22081032
Alignment:
| Q |
437 |
tcttgaagtgtgtttggaaggttaataagtttaaggagtagaccttctctgcagaagtacaacccacttcccccaaggaagtgacatatgctttttcaaa |
536 |
Q |
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| T |
22080890 |
tcttgaagtgtgtttgcaaggttaataagtttaggcagtagaccttctctgcagaagtacaacccacttcccccaaggaagtgacatatgctttttcaaa |
22080989 |
T |
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| Q |
537 |
aaccttttgaaaatctttctgcagatttccctcatttccctct |
579 |
Q |
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| T |
22080990 |
aaccttttgaaaatctttctgcagatttccctcatttccctct |
22081032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 22080447 - 22080583
Alignment:
| Q |
12 |
atcatcaaaaacaaaatagaaatgcagttcaatagatctttgatatgtctttgattaaaatgacttctgaaacaattttagttcgaaaaattgatttaat |
111 |
Q |
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| T |
22080447 |
atcatcaaatacaaaacagaaatgcagttcaatagatctttgatacgtctttcattaaaatgacttctcaaacaattttagttcgaaaaactgatttaat |
22080546 |
T |
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| Q |
112 |
gcaagaaggaaaaccgatctattgaaatgttgttcac |
148 |
Q |
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| T |
22080547 |
gcaagaaggaaaaccgatctatttaagtgttgttcac |
22080583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 243 - 368
Target Start/End: Original strand, 22080708 - 22080829
Alignment:
| Q |
243 |
taccaggatgaagaatgcttgaaggaaactgaaaaatgggaagnnnnnnnncggaacaaaatgagattgaattaataaatgcttgagctgtgaaatcgaa |
342 |
Q |
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| T |
22080708 |
taccaggatgaagaatgcttgaaggaacctgaaaaatgggaa----aaaaacggaacaaaatgagattcaattaataaatgcttgagctgtgaaatcgaa |
22080803 |
T |
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| Q |
343 |
aataaaatggaaaaatagcaagatga |
368 |
Q |
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| T |
22080804 |
aataaaatggaaaaatagaaagatga |
22080829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 569
Target Start/End: Complemental strand, 1521913 - 1521837
Alignment:
| Q |
493 |
gtacaacccacttcccccaaggaagtgacatatgctttttcaaaaaccttttgaaaatctttctgcagatttccctc |
569 |
Q |
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| T |
1521913 |
gtacaacccacttcccccaaggaagtgacatatgctttttccaaagccatttcaaaatctttctgaagatttccctc |
1521837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 1522017 - 1521980
Alignment:
| Q |
243 |
taccaggatgaagaatgcttgaaggaaactgaaaaatg |
280 |
Q |
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| T |
1522017 |
taccaggatgaagaatgcttgaaggaacctgcaaaatg |
1521980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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