View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10623_2 (Length: 541)
Name: NF10623_2
Description: NF10623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10623_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 29006455 - 29006995
Alignment:
| Q |
1 |
atcaagatttagagtcctgacgaaggggatgggagttgaacctactccctttaaggaccatgaatcaactatttatcaattaaacctacctatatgttac |
100 |
Q |
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| T |
29006455 |
atcaagatttagagtcctgacgaaggggatgggagttgaatctactccctttaaggaccatgaatcaactatttatcaattaaaccaacctatatgttac |
29006554 |
T |
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| Q |
101 |
atgtatacccattaaaaatgatttggagaagttcatttcattaggtgaaacaattttttcttcaaaaattggatattctctagcacagcagcaaacacta |
200 |
Q |
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| T |
29006555 |
atgtttacccattaaaaatgatttggagaatttcatttcattaggtgaaacaattttttcttcaaaaattggatattctctagcacagcagcaaacacta |
29006654 |
T |
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| Q |
201 |
atctctaaattgagtagaatgacaattgactgcaaaatactccttatgagttttaacattgttgaaattttagaccagtttgttcaaacacacgaccact |
300 |
Q |
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| T |
29006655 |
atctctaaattgagtagaatgacaattgactgcaaaatactccttatgagttttaacattgttgaaattttagaccagattgttcaaacacacgaccact |
29006754 |
T |
|
| Q |
301 |
aaagctgaaagagatatgtatcagtaatcacattatccaaatgctctgatgaaaccatttcaagtacatgccactcagactagcatggaatttttggcta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006755 |
aaagctgaaagagatatgtatcagtaatcacattatccaaatgctttgatgaaaccatttcaagtacatgccactcagactagcatggaatttttggcta |
29006854 |
T |
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| Q |
401 |
attaaaattataacatcaattgtaatttgattcaattatttaataagaatggatagctcaaataaacacttctttaaaatgtacttccagaaaagtaatg |
500 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29006855 |
attaaaattataacaccaattgtaatttgattcaattatttaataagaatggatagctcaaataaacacttctttaaaatgtacctccagaaaagtaatg |
29006954 |
T |
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| Q |
501 |
aactcataacatgagaaatctaattgaacaaaaaaggagca |
541 |
Q |
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| T |
29006955 |
aactcataacatgagaaatctaattgaacaaaaaaggagca |
29006995 |
T |
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