View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10623_3 (Length: 501)

Name: NF10623_3
Description: NF10623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10623_3
NF10623_3
[»] chr6 (5 HSPs)
chr6 (300-494)||(3012856-3013058)
chr6 (150-261)||(4201188-4201299)
chr6 (148-261)||(24740372-24740487)
chr6 (111-176)||(3012571-3012636)
chr6 (42-114)||(3012284-3012354)
[»] chr8 (2 HSPs)
chr8 (148-261)||(25998101-25998216)
chr8 (211-247)||(41537595-41537631)
[»] chr7 (1 HSPs)
chr7 (123-261)||(10371107-10371243)
[»] chr5 (3 HSPs)
chr5 (148-261)||(40289031-40289146)
chr5 (170-261)||(7302375-7302466)
chr5 (170-261)||(16445715-16445806)
[»] chr4 (1 HSPs)
chr4 (170-261)||(6122553-6122644)
[»] chr3 (2 HSPs)
chr3 (148-261)||(6300971-6301086)
chr3 (219-269)||(33524537-33524587)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 494
Target Start/End: Original strand, 3012856 - 3013058
Alignment:
Q  300 tggtgtacgtgtcaactgcaattagtaaaacaacgacttatttt-ccaatgcaagtttgtccaactcctattgttggagtaagaacctcgttggtgggga 398  Q
    ||||||| ||||||||  ||||| |||||||||| ||||||||| ||||||||||||||| ||||| ||||||| |||||||||| |||||||||| | |    
T  3012856 tggtgtatgtgtcaaccacaattggtaaaacaacaacttatttttccaatgcaagtttgttcaacttctattgtcggagtaagaatctcgttggtgagaa 3012955  T
Q  399 gctg-------taagtacctcagtcactggtctatgaactttgaggcgtgccctgccccatgtgagtcctggggaagagagtcaacttacctaaaccttt 491  Q
    | ||       ||||||||||      ||||||| |||||||||||||||||||||||  |||||| |||  ||||  ||||||||||||||||||||||    
T  3012956 gttgtaacttctaagtacctcttatggtggtctaggaactttgaggcgtgccctgccctttgtgagccctaaggaaatgagtcaacttacctaaaccttt 3013055  T
Q  492 ttt 494  Q
    |||    
T  3013056 ttt 3013058  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 4201299 - 4201188
Alignment:
Q  150 tgtacaataaagttggtgtattaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaatctagaaaattaattacacttaactgc 249  Q
    |||||||| | |||||||||||||||||||||||||   |||||||||||||| |  ||||||||||||||||| ||| |||| || |||||||||||||    
T  4201299 tgtacaatgatgttggtgtattaattttaagaaaagggcaatatagtcaatttaatttatgttttacacaaaatttaggaaatcaactacacttaactgc 4201200  T
Q  250 atttcttaatca 261  Q
    ||||||||||||    
T  4201199 atttcttaatca 4201188  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 148 - 261
Target Start/End: Complemental strand, 24740487 - 24740372
Alignment:
Q  148 gttgtacaataaagttggtgta--ttaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaatctagaaaattaattacacttaa 245  Q
    |||||||||| | |||||||||  ||||||||||||||||   |||||||||||||| || ||||||||| ||||||| |||||||| || |||||||||    
T  24740487 gttgtacaatcatgttggtgtacattaattttaagaaaagggcaatatagtcaatttaacttatgttttatacaaaatttagaaaatcaactacacttaa 24740388  T
Q  246 ctgcatttcttaatca 261  Q
    ||||||||||||||||    
T  24740387 ctgcatttcttaatca 24740372  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 3012571 - 3012636
Alignment:
Q  111 aaaccaagagtttgtaataaatttaactctgaatgaggttgtacaataaagttggtgtattaattt 176  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3012571 aaaccaagagtttgtgataaatttaactttgaatgaggttgtacaataaagttggtgtattaattt 3012636  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 3012284 - 3012354
Alignment:
Q  42 aacaaaatttagattaagagaggtacattttacannnnnnnnacttcaggaaaggtacaatttacatataaac 114  Q
    ||||||||||||||||||||||||| ||||||||        |||||  ||||||||||||||||||||||||    
T  3012284 aacaaaatttagattaagagaggtatattttacattttttttacttc--gaaaggtacaatttacatataaac 3012354  T

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Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 25998101 - 25998216
Alignment:
Q  148 gttgtacaataaagttggtgta--ttaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaatctagaaaattaattacacttaa 245  Q
    |||||||||| | |||||||||  ||||||||||||||||   |||||||||||||| || ||||||||| ||||||| |||||||| || |||||||||    
T  25998101 gttgtacaatcatgttggtgtacattaattttaagaaaagggcaatatagtcaatttaacttatgttttatacaaaatttagaaaatcaactacacttaa 25998200  T
Q  246 ctgcatttcttaatca 261  Q
    ||||||||||||||||    
T  25998201 ctgcatttcttaatca 25998216  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 41537631 - 41537595
Alignment:
Q  211 ttttacacaaaatctagaaaattaattacacttaact 247  Q
    |||||||||||||||| |||||||||| |||||||||    
T  41537631 ttttacacaaaatctaaaaaattaattgcacttaact 41537595  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 261
Target Start/End: Original strand, 10371107 - 10371243
Alignment:
Q  123 tgtaataaatttaactctgaatgaggttgtacaataaagttggtgtattaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaa 222  Q
    ||||||||||||  ||||||||| ||||||||||||| ||||||||  |||||||||||||||   |||||||||||||  ||  |||||||||||||      
T  10371107 tgtaataaattt--ctctgaatgcggttgtacaataatgttggtgttgtaattttaagaaaagggcaatatagtcaattcaactaatgttttacacaagt 10371204  T
Q  223 tctagaaaattaattacacttaactgcatttcttaatca 261  Q
    | || |||||||| ||||||||||| |||||||||||||    
T  10371205 tttaaaaaattaactacacttaactacatttcttaatca 10371243  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 40289031 - 40289146
Alignment:
Q  148 gttgtacaataaagttggtgta--ttaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaatctagaaaattaattacacttaa 245  Q
    |||||||||| | |||||||||  |||||||||||||||    |||||||||||||| || ||||||||| ||||||| |||||||| || |||||||||    
T  40289031 gttgtacaatcatgttggtgtacattaattttaagaaaatggcaatatagtcaatttaacttatgttttatacaaaatttagaaaatcaactacacttaa 40289130  T
Q  246 ctgcatttcttaatca 261  Q
    ||||||||||||||||    
T  40289131 ctgcatttcttaatca 40289146  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 7302466 - 7302375
Alignment:
Q  170 ttaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaatctagaaaattaattacacttaactgcatttcttaatca 261  Q
    ||||||||||||||||   ||||||||| |||| || ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  7302466 ttaattttaagaaaagggcaatatagtccatttgacttatgttttacacaaattctagaaaattaattacacttaacagtatttcttaatca 7302375  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 16445715 - 16445806
Alignment:
Q  170 ttaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaatctagaaaattaattacacttaactgcatttcttaatca 261  Q
    ||||||||||||||||   ||||||||| |||| || ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  16445715 ttaattttaagaaaagggcaatatagtccatttgacttatgttttacacaaattctagaaaattaattacacttaacagtatttcttaatca 16445806  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 6122644 - 6122553
Alignment:
Q  170 ttaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaatctagaaaattaattacacttaactgcatttcttaatca 261  Q
    ||||||||||||||||   ||||||||| |||| || ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  6122644 ttaattttaagaaaagggcaatatagtccatttgacttatgttttacacaaattctagaaaattaattacacttaacagtatttcttaatca 6122553  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 6300971 - 6301086
Alignment:
Q  148 gttgtacaataaagttggtgta--ttaattttaagaaaagtaaaatatagtcaattttacctatgttttacacaaaatctagaaaattaattacacttaa 245  Q
    |||||||||| | |||||||||  |||||||||||| |||   |||||||||||||| || ||||||||| ||||||| |||||||| || || ||||||    
T  6300971 gttgtacaatcatgttggtgtacattaattttaagagaagggcaatatagtcaatttaacttatgttttatacaaaatttagaaaatcaactatacttaa 6301070  T
Q  246 ctgcatttcttaatca 261  Q
    ||||||||||||||||    
T  6301071 ctgcatttcttaatca 6301086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 33524537 - 33524587
Alignment:
Q  219 aaaatctagaaaattaattacacttaactgcatttcttaatcatcataaaa 269  Q
    ||||||||||||||||||||||||| |||  |||| ||||||||| |||||    
T  33524537 aaaatctagaaaattaattacacttgactaaatttattaatcatcctaaaa 33524587  T

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