View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10623_4 (Length: 334)
Name: NF10623_4
Description: NF10623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10623_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 32240442 - 32240769
Alignment:
| Q |
1 |
gtatatgtggtttctgcaaaaggtaattaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240442 |
gtatatgtggtttctgcaaaaggtaattaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaa |
32240541 |
T |
|
| Q |
101 |
ttgattctgacactgcgtgtataaaagatgaaattcatatg--ccctttttctctataaaatggtgcttgctgtgttcatttcatctcagtcaataattt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240542 |
ttgattctgacactgcgtgtataaaagatgaaattcatatgtgccctttttctctataaaatggtgcttgctgtgttcatttcatctcagtcaataattt |
32240641 |
T |
|
| Q |
199 |
ccacgcagcgctgtgagggacgaaatctgattgttaatttgtgtaattttcgtttgctataaaagttcacaaggtatgcccattctttatcatgttttgt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240642 |
ccacgcagcgctgtgagggacgaaatctgattgttaatttgtgtaattttcgtttgctataaaagttcacaaggtatgcccattctttatcatgttttgt |
32240741 |
T |
|
| Q |
299 |
gtttatttttcattgttgcatattcttc |
326 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
32240742 |
gtttatttttcattgttgcatcttcttc |
32240769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 45148029 - 45148070
Alignment:
| Q |
278 |
ccattctttatcatgttttgtgtttatttttcattgttgcat |
319 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45148029 |
ccattttttctcatgttttgtgtttatttttcattgttgcat |
45148070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 46268019 - 46267978
Alignment:
| Q |
278 |
ccattctttatcatgttttgtgtttatttttcattgttgcat |
319 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
46268019 |
ccattttttctcatgttttatgtttatttttcattgttgcat |
46267978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University