View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10623_5 (Length: 334)
Name: NF10623_5
Description: NF10623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10623_5 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 53057255 - 53057550
Alignment:
| Q |
12 |
atgaatcaaaccaaccaccaaccagtgaattggccagttttcggttcaattggtagaactggccgattcggtctgttttaaaacattgacatgaaaattg |
111 |
Q |
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| T |
53057255 |
atgaatcaaaccaaccaccaaccagtgaattggccagttttcggttcaattggtagaactggccgattcggtctgttttaaaacattgacatgaaaattg |
53057354 |
T |
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| Q |
112 |
aagtaggatgtaacatgaacaatagatttagacaacaatgaaaccaactaacatgtcagtctatgattatatgatgacagcagcagtggcaggcagtacc |
211 |
Q |
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| T |
53057355 |
aagtaggatgtaacatgaacaatagatttaggcaacaatgaaaccaactaacatgtcagtttatgattatatgatgacagcagcagtggcaggcagtacc |
53057454 |
T |
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| Q |
212 |
gaccataaagcccttaacagtagtacttaattcatctgcaactctggcctcagaaaatccaacacgaggtgaggcctaaagttatgtgggggaatc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53057455 |
taccataaagcccttaacagtagtacttaattcatctgcaactctggcctcagaaaatccaacacgaggtgaggcctaaagttatgtgggggaatc |
53057550 |
T |
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