View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10623_low_3 (Length: 241)

Name: NF10623_low_3
Description: NF10623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10623_low_3
NF10623_low_3
[»] chr3 (6 HSPs)
chr3 (1-223)||(4141927-4142149)
chr3 (1-223)||(4157734-4157959)
chr3 (12-223)||(3754636-3754853)
chr3 (181-223)||(989432-989474)
chr3 (123-155)||(2686227-2686259)
chr3 (12-76)||(3746197-3746261)
[»] chr5 (4 HSPs)
chr5 (1-223)||(11081849-11082077)
chr5 (118-158)||(1427603-1427643)
chr5 (191-223)||(23814076-23814108)
chr5 (191-223)||(23861009-23861041)
[»] chr4 (1 HSPs)
chr4 (191-224)||(22672110-22672143)
[»] chr1 (1 HSPs)
chr1 (191-223)||(51381438-51381470)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4141927 - 4142149
Alignment:
Q  1 atagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4141927 atagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccctcctgggattgtaaagaatcaa 4142026  T
Q  101 attcaagtcaaaatcatacttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142027 attcaagtcaaaatcatacttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaagga 4142126  T
Q  201 atagtgaacaatttagtccaaga 223  Q
    |||||||||||||||||||||||    
T  4142127 atagtgaacaatttagtccaaga 4142149  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4157734 - 4157959
Alignment:
Q  1 atagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaa 100  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||| ||  ||||||| |||||||| | |||    
T  4157734 atagagaactaggtgatattaaactttcaatacatacttcaggaattagtttaaaattagtagccttcaaagtgccgctcctggggttgtaaaggaccaa 4157833  T
Q  101 attcaagtcaaaatcat---acttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaa 197  Q
    |||||||||| ||||||   ||| ||||||||||||||||||||||||||||||||||||| |||||    |||||  ||||||||||| |||| |||||    
T  4157834 attcaagtcagaatcatacaactccagcaacacttgatcatcctcaaaaacatatattgccttggcaaaagccttaaatttagaaggatgtctcttgtaa 4157933  T
Q  198 ggaatagtgaacaatttagtccaaga 223  Q
    |  |||||||||||||||||||||||    
T  4157934 gagatagtgaacaatttagtccaaga 4157959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 3754853 - 3754636
Alignment:
Q  12 ggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaa 111  Q
    |||||||||||||||||| |||||||||| ||| |   |||||| ||| ||||||| || |||||  ||||||| |||||||||| ||||||||||||||    
T  3754853 ggtgatattaaactttcaccacagacttctggagtatatttaaagttaatagccttcaaggtaccgctcctggggttgtaaagaaccaaattcaagtcaa 3754754  T
Q  112 aatcat------acttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagt 205  Q
     |||||      |||||||||||||||||||||||||||||  ||| | |||| | |||  |||||  ||||||||||||||||||||| ||||||||||    
T  3754753 tatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaagacctcgggtttagaaggatctctcatgcaaggaatagt 3754654  T
Q  206 gaacaatttagtccaaga 223  Q
     |||||||||||||||||    
T  3754653 aaacaatttagtccaaga 3754636  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 989474 - 989432
Alignment:
Q  181 aaggatctctcatgtaaggaatagtgaacaatttagtccaaga 223  Q
    ||||||||  |||||||| ||||||||||||||||||||||||    
T  989474 aaggatcttgcatgtaagaaatagtgaacaatttagtccaaga 989432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 2686227 - 2686259
Alignment:
Q  123 agcaacacttgatcatcctcaaaaacatatatt 155  Q
    |||| ||||||||||||||||||||||||||||    
T  2686227 agcagcacttgatcatcctcaaaaacatatatt 2686259  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 3746261 - 3746197
Alignment:
Q  12 ggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacc 76  Q
    |||||||||||||| |||||||||||||| |||| |  | |||||| ||||| ||| ||||||||    
T  3746261 ggtgatattaaactctcaacacagacttctggaacttttctaaaatcagtagacttcaaagtacc 3746197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11082077 - 11081849
Alignment:
Q  1 atagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaa 100  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||||   |||||||||| ||||||| |||||||   |||| |||||||||||||||||    
T  11082077 atagagaacaaggtgatactaaactttcaacacagacttctggaatatctttaaaattattagccttcaaagtacggctcctaggattgtaaagaatcaa 11081978  T
Q  101 attcaagtcaaaatcat------acttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatg 194  Q
    |||||||||||||||||      |||||| ||||||||||||||||||||| | ||||| |||| ||| |  ||| | | ||||||||||||||||||||    
T  11081977 attcaagtcaaaatcattcataaacttcaacaacacttgatcatcctcaaatatatatactgccttgggaaagacatcacgtttagaaggatctctcatg 11081878  T
Q  195 taaggaatagtgaacaatttagtccaaga 223  Q
    ||||||||||| |||||||||||||||||    
T  11081877 taaggaatagtaaacaatttagtccaaga 11081849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 1427603 - 1427643
Alignment:
Q  118 acttcagcaacacttgatcatcctcaaaaacatatattgcc 158  Q
    ||||||||| |||||||||||||||||| | ||||||||||    
T  1427603 acttcagcagcacttgatcatcctcaaagatatatattgcc 1427643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 23814076 - 23814108
Alignment:
Q  191 catgtaaggaatagtgaacaatttagtccaaga 223  Q
    |||| ||||||||||||||||||||||||||||    
T  23814076 catgaaaggaatagtgaacaatttagtccaaga 23814108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 23861009 - 23861041
Alignment:
Q  191 catgtaaggaatagtgaacaatttagtccaaga 223  Q
    |||| ||||||||||||||||||||||||||||    
T  23861009 catgaaaggaatagtgaacaatttagtccaaga 23861041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 22672110 - 22672143
Alignment:
Q  191 catgtaaggaatagtgaacaatttagtccaagat 224  Q
    |||||||| |||||||||||||||||||||||||    
T  22672110 catgtaagaaatagtgaacaatttagtccaagat 22672143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 51381438 - 51381470
Alignment:
Q  191 catgtaaggaatagtgaacaatttagtccaaga 223  Q
    ||||||||||||| |||||||||||||||||||    
T  51381438 catgtaaggaatactgaacaatttagtccaaga 51381470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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