View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10623_low_4 (Length: 239)

Name: NF10623_low_4
Description: NF10623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10623_low_4
NF10623_low_4
[»] chr6 (3 HSPs)
chr6 (47-112)||(3012571-3012636)
chr6 (109-181)||(3012284-3012354)
chr6 (21-73)||(4201247-4201299)
[»] chr7 (1 HSPs)
chr7 (22-100)||(10371107-10371183)


Alignment Details
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 3012636 - 3012571
Alignment:
Q  47 aaattaatacaccaactttattgtacaacctcattcagagttaaatttattacaaactcttggttt 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  3012636 aaattaatacaccaactttattgtacaacctcattcaaagttaaatttatcacaaactcttggttt 3012571  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 3012354 - 3012284
Alignment:
Q  109 gtttatatgtaaattgtacctttcctgaagtnnnnnnnntgtaaaatgtacctctcttaatctaaattttgtt 181  Q
    ||||||||||||||||||||||||  |||||        |||||||| |||||||||||||||||||||||||    
T  3012354 gtttatatgtaaattgtacctttc--gaagtaaaaaaaatgtaaaatatacctctcttaatctaaattttgtt 3012284  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 4201247 - 4201299
Alignment:
Q  21 aaattgactatattttacttttcttaaaattaatacaccaactttattgtaca 73  Q
    ||||||||||||||   ||||||||||||||||||||||||| | ||||||||    
T  4201247 aaattgactatattgcccttttcttaaaattaatacaccaacatcattgtaca 4201299  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 10371183 - 10371107
Alignment:
Q  22 aattgactatattttacttttcttaaaattaatacaccaactttattgtacaacctcattcagagttaaatttattaca 100  Q
    |||||||||||||   |||||||||||||||  |||||||| ||||||||||||| |||||||||  ||||||||||||    
T  10371183 aattgactatattgcccttttcttaaaattacaacaccaacattattgtacaaccgcattcagag--aaatttattaca 10371107  T

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