View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10624_1 (Length: 614)
Name: NF10624_1
Description: NF10624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10624_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 263 - 612
Target Start/End: Complemental strand, 20389623 - 20389274
Alignment:
| Q |
263 |
gttgttacttccagctctaactctgatgatctattcaaaaggcttgaaatttgaggcaactttgagatacttgatatagacacatgtgaagcttcaactt |
362 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20389623 |
gttgttacttccaactctaactctgatgatctattcaaaaggcttgaaatttgaggcaactttgagatacttgatatagagacatgtgaagcttcaactt |
20389524 |
T |
|
| Q |
363 |
tattttcttgaaaaccaaattgatctaatgccattacatgattcatactaataatttgaacaaaagggtattctaaattcttgttttcaaccaatttttt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20389523 |
tattttcttgaaaaccaaattgatctaatgccattacatgattcatactaataatttgaacaaaagggtattccaaattcttgttttcaaccaatttttt |
20389424 |
T |
|
| Q |
463 |
gcaagtttgatacaaatcatgaagcttttgactttgaatagaacctttcttgagtatttcacaagctaagcttttagctgaagattccaagtcaaagaac |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20389423 |
gcaagtttgatacaaatcatgaagcttttgactttgaatagaacctttcttgagtatttcacaggctaagcttttagctgaagattccaagtcaaagaac |
20389324 |
T |
|
| Q |
563 |
atgttaacaagagcttcaatgccttcacaaaatgtcatgtaaacttggaa |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20389323 |
atgttaacaagagcttcaatgccttcacaaaatgtcatgtaaacttggaa |
20389274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 61 - 231
Target Start/End: Complemental strand, 20389825 - 20389655
Alignment:
| Q |
61 |
ctttctacatcacttatagcataattaacacttccaatttccaagcctttattgtgttggaaggatttgtgattcattatgaacttcatcttcaaatacc |
160 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20389825 |
ctttctacatcacttatagcataattaaaacttccaatttccaagcctttattgtgttggaaggatttgtgattcattatgaacttcatcttcaaatacc |
20389726 |
T |
|
| Q |
161 |
acccaaaccttgctaattttagtctctagtgtccatgaagaaagagtttgtgttgttgaaaaaattaaatc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20389725 |
acccaaaccttgctaattttagtctctagtgtccatgaagaaagagttggtgttgttgaaaaaattaaatc |
20389655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 20389872 - 20389843
Alignment:
| Q |
13 |
aatattaacttttaacatcactttcaagtc |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20389872 |
aatattaacttttaacatcactttcaagtc |
20389843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University