View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10624_14 (Length: 315)
Name: NF10624_14
Description: NF10624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10624_14 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 1841398 - 1841103
Alignment:
| Q |
19 |
gagtgaaatgaaaataaatcaacaaaatagagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggag |
118 |
Q |
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| T |
1841398 |
gagtgaaatgaaaataaatcaacaaaatggagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggag |
1841299 |
T |
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| Q |
119 |
ttgtctgagaaattcattgcactttcagccactattcccggcttgagcaaggtaaatttgtcactagtttcatcgggtccattattcgcataacatattt |
218 |
Q |
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| T |
1841298 |
ttgtctgagaaattcattgcactttcagccactattcccggcttgagcaaggtaaatttgtcactagtttcatcggatccattattcgtataatatattt |
1841199 |
T |
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| Q |
219 |
tgatcatatttttctaaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaag |
314 |
Q |
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| T |
1841198 |
tgatcatatttttctaaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaag |
1841103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 1824048 - 1823912
Alignment:
| Q |
48 |
gagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggagttgtctgagaaattcattgcactttcagc |
147 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| || |||||||| ||||||||||||||||| || |
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| T |
1824048 |
gagtgaagaaaggtagaagcagttcacaatgtattgatcatataatggcagagagaaaaaggagacaagaattgtctgaaaaattcattgcactttcggc |
1823949 |
T |
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| Q |
148 |
cactattcccggcttgagcaaggtaaatttgtcacta |
184 |
Q |
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| T |
1823948 |
tactattcctggattgagcaaggtaaatttgtaacta |
1823912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 1820920 - 1820839
Alignment:
| Q |
233 |
taaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaag |
314 |
Q |
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|||||||||| ||||| | |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
1820920 |
taaaattttacgattccttctttatagatggacaaggcttcattacttcgagaagcgattgattatgtgaaacaacttaaag |
1820839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 19342820 - 19342851
Alignment:
| Q |
199 |
attattcgcataacatattttgatcatatttt |
230 |
Q |
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| T |
19342820 |
attattcgcataacatattttgatcatatttt |
19342851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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