View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10624_16 (Length: 312)
Name: NF10624_16
Description: NF10624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10624_16 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 3088167 - 3088360
Alignment:
| Q |
11 |
cataggggactgccatgaggatatgtgtgttgcaggagctatcaaaaatttcacttctcaactttctcattacaaagagggaacatctgatcgtagatgt |
110 |
Q |
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| T |
3088167 |
cataggggactgccttgaggacatgtgtgttgcaggagctatcaaaaatttcacttctcaactttctcattacaaagagggaacatctgatcgtagatgt |
3088266 |
T |
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| Q |
111 |
aaggaactcatgtctgtcatttattttccctttcagaaatttttagacttattttacttcatgatattaattactgaagattttgttataaaaa |
204 |
Q |
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| T |
3088267 |
aaggaactcatgtctgtcattttttttccctttcagaaatttttagacttattttacttcatgatattaattactggagattttgttaaaaaaa |
3088360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 8085506 - 8085631
Alignment:
| Q |
185 |
tgaagattttgttataaaaatgggtttggatagtggaattatagatatgagtttcaatgatttcttcagcttcgaaagcgacgttacgaatctcggaaac |
284 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
8085506 |
tgaagattttgttatgaaaatgggtttgaatagtggaattatagatatgagtttcaatgatttcttcagcttcgaaagtgacgttacgaatatcggaaac |
8085605 |
T |
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| Q |
285 |
ccacatacgaacacgttcgttggatt |
310 |
Q |
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| T |
8085606 |
ccacatacgaacacgttcgttggatt |
8085631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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