View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10624_3 (Length: 504)

Name: NF10624_3
Description: NF10624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10624_3
NF10624_3
[»] chr7 (13 HSPs)
chr7 (133-274)||(33382346-33382487)
chr7 (133-272)||(32745884-32746023)
chr7 (134-277)||(40474374-40474517)
chr7 (134-280)||(28681849-28681992)
chr7 (133-279)||(46400042-46400188)
chr7 (151-274)||(45920064-45920187)
chr7 (153-274)||(45067543-45067664)
chr7 (133-259)||(31845141-31845267)
chr7 (151-268)||(35086400-35086517)
chr7 (141-224)||(11353728-11353810)
chr7 (151-274)||(8550611-8550734)
chr7 (141-212)||(32030317-32030388)
chr7 (266-307)||(32747060-32747101)
[»] chr8 (24 HSPs)
chr8 (1-110)||(33838005-33838114)
chr8 (133-279)||(19147544-19147690)
chr8 (381-480)||(33837403-33837501)
chr8 (151-279)||(33691658-33691786)
chr8 (151-279)||(10902988-10903116)
chr8 (133-259)||(4885470-4885596)
chr8 (141-273)||(26053596-26053728)
chr8 (133-259)||(21184068-21184194)
chr8 (189-279)||(17564448-17564538)
chr8 (152-274)||(42475672-42475789)
chr8 (176-272)||(19127329-19127425)
chr8 (142-245)||(10226777-10226881)
chr8 (151-262)||(40346963-40347074)
chr8 (133-273)||(14333949-14334078)
chr8 (136-257)||(40614641-40614762)
chr8 (151-215)||(27114944-27115008)
chr8 (142-206)||(33238103-33238167)
chr8 (268-330)||(10904464-10904527)
chr8 (164-223)||(28733984-28734043)
chr8 (161-206)||(13947149-13947194)
chr8 (151-274)||(15254947-15255070)
chr8 (268-307)||(33690399-33690438)
chr8 (272-307)||(36369864-36369899)
chr8 (203-279)||(8259099-8259175)
[»] chr1 (14 HSPs)
chr1 (133-274)||(15649100-15649241)
chr1 (147-279)||(32132013-32132145)
chr1 (133-274)||(790094-790235)
chr1 (151-279)||(24186652-24186780)
chr1 (151-277)||(34387555-34387681)
chr1 (151-279)||(27842558-27842686)
chr1 (151-279)||(34393625-34393753)
chr1 (133-279)||(17305044-17305189)
chr1 (133-272)||(51236294-51236432)
chr1 (161-259)||(24918874-24918972)
chr1 (141-262)||(33376538-33376654)
chr1 (166-279)||(22871241-22871354)
chr1 (133-273)||(32000583-32000723)
chr1 (268-307)||(8066717-8066756)
[»] chr2 (7 HSPs)
chr2 (133-267)||(9623917-9624050)
chr2 (151-279)||(31365492-31365620)
chr2 (133-259)||(43177118-43177244)
chr2 (133-268)||(2153988-2154118)
chr2 (268-307)||(2152963-2153002)
chr2 (151-262)||(5270442-5270553)
chr2 (268-307)||(41193372-41193411)
[»] chr4 (18 HSPs)
chr4 (133-279)||(23516104-23516250)
chr4 (133-274)||(35653290-35653430)
chr4 (133-273)||(38935775-38935910)
chr4 (133-279)||(46171634-46171780)
chr4 (133-230)||(26463914-26464011)
chr4 (133-259)||(23393144-23393270)
chr4 (133-259)||(49706384-49706510)
chr4 (151-279)||(12389167-12389295)
chr4 (151-279)||(31879528-31879656)
chr4 (133-262)||(9117307-9117436)
chr4 (151-273)||(27510778-27510900)
chr4 (151-279)||(6582333-6582461)
chr4 (151-273)||(16048074-16048193)
chr4 (151-242)||(48995737-48995828)
chr4 (160-245)||(2736707-2736792)
chr4 (148-240)||(47996589-47996680)
chr4 (269-307)||(6583940-6583978)
chr4 (233-278)||(26460712-26460757)
[»] chr5 (9 HSPs)
chr5 (133-272)||(32955809-32955948)
chr5 (133-279)||(28747551-28747689)
chr5 (151-279)||(3523155-3523283)
chr5 (160-274)||(31069140-31069254)
chr5 (161-261)||(31508461-31508561)
chr5 (133-279)||(26818356-26818497)
chr5 (160-262)||(33062040-33062142)
chr5 (133-203)||(8465186-8465256)
chr5 (141-214)||(42545710-42545778)
[»] chr3 (21 HSPs)
chr3 (133-274)||(44773937-44774078)
chr3 (133-245)||(18021744-18021856)
chr3 (131-259)||(40292891-40293019)
chr3 (133-279)||(50309003-50309148)
chr3 (151-274)||(13857073-13857195)
chr3 (133-279)||(10222998-10223139)
chr3 (153-272)||(32863566-32863685)
chr3 (142-261)||(44416396-44416515)
chr3 (133-226)||(13840785-13840878)
chr3 (166-279)||(5938085-5938198)
chr3 (142-262)||(33639403-33639523)
chr3 (154-262)||(50303218-50303326)
chr3 (151-274)||(55325189-55325311)
chr3 (160-274)||(34122365-34122479)
chr3 (141-279)||(40929327-40929465)
chr3 (142-274)||(50328335-50328467)
chr3 (139-205)||(5293235-5293301)
chr3 (135-209)||(8600202-8600276)
chr3 (163-245)||(25639412-25639494)
chr3 (137-204)||(20254758-20254825)
chr3 (268-307)||(44772775-44772814)
[»] scaffold0488 (2 HSPs)
scaffold0488 (133-279)||(7364-7510)
scaffold0488 (268-316)||(6093-6142)
[»] chr6 (11 HSPs)
chr6 (133-246)||(27596507-27596620)
chr6 (151-279)||(17154294-17154422)
chr6 (151-279)||(33702565-33702688)
chr6 (151-274)||(23111312-23111435)
chr6 (151-268)||(29092773-29092890)
chr6 (151-280)||(12356342-12356471)
chr6 (151-259)||(29397942-29398049)
chr6 (141-224)||(8636143-8636226)
chr6 (268-330)||(27597388-27597451)
chr6 (153-273)||(1800909-1801029)
chr6 (271-307)||(33703832-33703868)
[»] scaffold0064 (1 HSPs)
scaffold0064 (151-279)||(54069-54197)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 33382346 - 33382487
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||     
T  33382346 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggttagcttcaaacttgaaacg 33382445  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 274  Q
     ||| ||||||||||||||||||||||||||||| |||||||    
T  33382446 attcggttcggttttcccgaaccatttcaaaattacggttcg 33382487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 32746023 - 32745884
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||     
T  32746023 aaatatttgttttggttcggttcggtatggttaataggtaagtaaatggttagccaaaccataactttggttcagttcggttagctccaaacttaaaacg 32745924  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggtt 272  Q
    |||| ||||  |||| ||||||||||||||||||||||||    
T  32745923 gttcggttcaatttttccgaaccatttcaaaatttcggtt 32745884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 134 - 277
Target Start/End: Complemental strand, 40474517 - 40474374
Alignment:
Q  134 aatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacag 233  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||| ||||||||    
T  40474517 aatatttgttttggttcggttcggtatggttaataagtaagcaaatggttaaccaaaccataactttggttcagttcggttagctcacaacctgaaacag 40474418  T
Q  234 ttcagttcggttttcccgaaccatttcaaaatttcggttcgatt 277  Q
    ||  ||| | |||||||||||||||||||||||||| |||||||    
T  40474417 tttggtttgattttcccgaaccatttcaaaatttcgattcgatt 40474374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 134 - 280
Target Start/End: Complemental strand, 28681992 - 28681849
Alignment:
Q  134 aatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacag 233  Q
    ||||||||||||||||| | |   || |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |    
T  28681992 aatatttgttttggttcagct---tatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggttagatccaaacttgaaacgg 28681896  T
Q  234 ttcagttcggttttcccgaaccatttcaaaatttcggttcgattcgt 280  Q
    ||||||||| ||||||| ||||||||||||||||| ||||| |||||    
T  28681895 ttcagttcgattttcccaaaccatttcaaaatttcagttcggttcgt 28681849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 46400188 - 46400042
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||||||| ||||||||| || |||||  ||||||||| ||||     
T  46400188 aaatatttgttttggttcggatcggtttggttaataggtaagcaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaacg 46400089  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||| |||| ||||| |||||||||||||| | || |||||| ||||    
T  46400088 gttcggttcagtttttccgaaccatttcaacactttggttcggttcg 46400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 45920064 - 45920187
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| ||||  ||| ||||||||    
T  45920064 ggttcggttcggttcataggtaagaaaacggttaacctaaccataactttggttcagttcggttagctccatacctgaaacggttcgattcagttttccc 45920163  T
Q  251 gaaccatttcaaaatttcggttcg 274  Q
    ||||||||||||||||||||||||    
T  45920164 gaaccatttcaaaatttcggttcg 45920187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 45067543 - 45067664
Alignment:
Q  153 ttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccga 252  Q
    |||||| ||||| ||| ||||| ||| |||||||| |||||||| ||||||||| ||||||||||| || || |||||| |||| |||| ||||||||||    
T  45067543 ttcggttcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctgcatacctgaaacggttcggttcagttttcccga 45067642  T
Q  253 accatttcaaaatttcggttcg 274  Q
    ||||||||||||||||||||||    
T  45067643 accatttcaaaatttcggttcg 45067664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 31845267 - 31845141
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||||||||| |||||||| ||  ||||||||||||||||||||||||||| |||||||| ||||||||| || |||||  ||||||||| ||||     
T  31845267 aaatatttgttttgcttcggttcagtttggttaataggtaagcaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaacg 31845168  T
Q  233 gttcagttcggttttcccgaaccattt 259  Q
    |||| ||||| || | ||||| |||||    
T  31845167 gttcggttcgattattccgaaacattt 31845141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 268
Target Start/End: Complemental strand, 35086517 - 35086400
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    ||||| || ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||| ||||| || |||||  |||| |||| ||||||||    
T  35086517 ggttcagttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaactccatacctgaaatggttcggttcagttttccc 35086418  T
Q  251 gaaccatttcaaaatttc 268  Q
    ||||||||||||||||||    
T  35086417 gaaccatttcaaaatttc 35086400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 11353810 - 11353728
Alignment:
Q  141 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaac 224  Q
    |||||||||||||| ||| ||||||||||| ||||||| |||||||| |||||||| ||||||||| ||||||||| |||||||    
T  11353810 gttttggttcggtt-ggttcggttaataggcaagcaaacggttaaccgaaccataactttggttcagttcggttagttccaaac 11353728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 8550611 - 8550734
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    ||||||||  ||| |||||| || |||| |||||||| |||||||| ||||||||| ||||||||| | ||||| | |||| |||| |||||||| |  |    
T  8550611 ggttcggtttggtaaataggcaaacaaacggttaaccgaaccataactttggttcagttcggttagtttcaaaccttaaacggttcggttcggttatttc 8550710  T
Q  251 gaaccatttcaaaatttcggttcg 274  Q
     ||||||||||| | |||||||||    
T  8550711 aaaccatttcaacacttcggttcg 8550734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 32030317 - 32030388
Alignment:
Q  141 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcgg 212  Q
    ||||||||||||||||||  || ||||||||||||||| |||||| | |||||||| ||||||||| |||||    
T  32030317 gttttggttcggttcggtttggctaataggtaagcaaacggttaatcgaaccataactttggttcagttcgg 32030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 32747060 - 32747101
Alignment:
Q  266 ttcggttcgattcgtgaactattataatggttcggttatttt 307  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  32747060 ttcggttcggttcgtgaaccattataatggttcggttatttt 32747101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 33838114 - 33838005
Alignment:
Q  1 atcacattgtctaaaaatctgcttcctcatccacgttacacctcttgaatttgtttctccctagttgaaactttaaaccataaaaataagactcgtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33838114 atcacattgtctaaaaatctgcttcctcatccacgttacaccttttgaatttgtttctccctagttgaaactttaaaccataaaaataagactcgtatgc 33838015  T
Q  101 atatataata 110  Q
    ||||||||||    
T  33838014 atatataata 33838005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 19147690 - 19147544
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| ||||||||||||||||||  |||| ||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||| || ||||||     
T  19147690 aaatattggttttggttcggttcggtttggttcataggtaagaaaatggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacg 19147591  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||| |||| ||||||||||| |||||||||||||||||||| ||||    
T  19147590 gttcggttcagttttcccgaatcatttcaaaatttcggttcggttcg 19147544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 381 - 480
Target Start/End: Complemental strand, 33837501 - 33837403
Alignment:
Q  381 aaaggacgaacttacttttttggtagtttgttcttttaaaggtgggtcaccctagagccatttgattaaaaaatttgttctttaactttaatgacctatg 480  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33837501 aaaggacgaacttgcttttttggtagtttgttcttttaaaggtgggttaccctagagccatttgatta-aaaatttgttctttaactttaatgacctatg 33837403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 33691658 - 33691786
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| |||||||||||||    
T  33691658 ggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcggttttccc 33691757  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    ||||||||||||||||||| |||| ||||    
T  33691758 gaaccatttcaaaatttcgattcggttcg 33691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 10903116 - 10902988
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||| | ||||| ||| ||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| |||||||||||||    
T  10903116 ggttcgattcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcggttttccc 10903017  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||||||||||||||||||| ||||    
T  10903016 gaaccatttcaaaatttcggttcggttcg 10902988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 4885470 - 4885596
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||  ||||||||| ||||     
T  4885470 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggttacttccaaactttaaacg 4885569  T
Q  233 gttcagttcggttttcccgaaccattt 259  Q
    |||| ||||  ||||||||||||||||    
T  4885570 gttcggttcaattttcccgaaccattt 4885596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 26053596 - 26053728
Alignment:
Q  141 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 240  Q
    ||||||||||||||||||  |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||| ||||||| | |||| |||| |||    
T  26053596 gttttggttcggttcggttaggttaataggcaagcaaacggttaaccgaaccataactttggttcaattcggttagttccaaaccttaaacggttcggtt 26053695  T
Q  241 cggttttcccgaaccatttcaaaatttcggttc 273  Q
    |  || | |||||||||||||| | ||||||||    
T  26053696 catttattccgaaccatttcaacacttcggttc 26053728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 21184068 - 21184194
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||||||||||||||||| ||| ||||  ||| |||||||||||||||||| |||||||| ||||||||| || |||||  ||||||||| ||||     
T  21184068 aaatatttgttttggttcggtttggttcggtatataagtaagcaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaacg 21184167  T
Q  233 gttcagttcggttttcccgaaccattt 259  Q
    |||| |||| ||||| |||||||||||    
T  21184168 gttcggttcagtttttccgaaccattt 21184194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 17564448 - 17564538
Alignment:
Q  189 aaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||| ||||||||| |||||||||||||| || |||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  17564448 aaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttcccgaaccatttcaaaatttcggttcggttcg 17564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 42475789 - 42475672
Alignment:
Q  152 gttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccg 251  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||| | |||     | |||||||| | |||    
T  42475789 gttcggttcggttaataggtatgcaaatggttaaccgaaccataactttggttcaattcggttagttccaaaccttaaa-----cggttcggttattccg 42475695  T
Q  252 aaccatttcaaaatttcggttcg 274  Q
    ||||||||||||| |||||||||    
T  42475694 aaccatttcaaaacttcggttcg 42475672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 19127425 - 19127329
Alignment:
Q  176 aaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaatttcggtt 272  Q
    |||||||||||| ||| | || ||||||||| |||||||||||||| || | |||| |||| |||||||||||||||| ||||||||||||||||||    
T  19127425 aaatggttaaccgaacaacaactttggttcagttcggttagctccatacctaaaacggttcggttcggttttcccgaatcatttcaaaatttcggtt 19127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 10226881 - 10226777
Alignment:
Q  142 ttttggttc-ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 240  Q
    ||||||||| |||||||| ||||||||||| ||| ||| |||||||| |||||||||||||||||| ||||||||| ||||||| | |||| |||  |||    
T  10226881 ttttggttctggttcggttcggttaataggcaagaaaacggttaaccgaaccataattttggttcagttcggttagttccaaaccttaaacggtttggtt 10226782  T
Q  241 cggtt 245  Q
    |||||    
T  10226781 cggtt 10226777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 40347074 - 40346963
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||| ||||||||||||| |||||| |||| ||||| | ||||||| ||||||||| | ||||| | |||| |||  |||||||||||||    
T  40347074 ggttcggttcggttcataggtaagcaaacggttaatcaaatcataactctggttcagttcggttagtttcaaaccttaaacggtttggttcggttttccc 40346975  T
Q  251 gaaccatttcaa 262  Q
     |||||||||||    
T  40346974 taaccatttcaa 40346963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 14334078 - 14333949
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| ||||||||||||||||||       ||||||||| ||| |  ||||| |||||||| ||||||||| ||| |||||||||| || ||||||     
T  14334078 aaatattggttttggttcggttcggtc------ataggtaagaaaacgagtaaccgaaccataactttggttcagttcagttagctccatacctgaaacg 14333985  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttc 273  Q
    ||||     ||||||| ||||||||||||||||||||||||    
T  14333984 gttc-----ggttttctcgaaccatttcaaaatttcggttc 14333949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 40614762 - 40614641
Alignment:
Q  136 tatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagtt 235  Q
    |||||||| || ||| ||||| |  ||||||||| |||| |||||||||||| |||||||| ||||||||| || |||||  ||||||||| |||| |||    
T  40614762 tatttgttgtgattcagttcgatttggttaatagataagtaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaacggtt 40614663  T
Q  236 cagttcggttttcccgaaccat 257  Q
    | ||||  |||| |||||||||    
T  40614662 cggttcaatttttccgaaccat 40614641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 27115008 - 27114944
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 215  Q
    |||||||| ||||||||||| ||| |||||||||||| |||||||| ||||||||| ||||||||    
T  27115008 ggttcggttcggttaatagggaagtaaatggttaaccgaaccataactttggttcagttcggtta 27114944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 33238103 - 33238167
Alignment:
Q  142 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttca 206  Q
    ||||||||||||||||| ||||||||| | ||||||| |||||||  |||||||| |||||||||    
T  33238103 ttttggttcggttcggttcggttaatatgcaagcaaacggttaactgaaccataactttggttca 33238167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 10904464 - 10904527
Alignment:
Q  268 cggttcgattcgtgaactattataatggttcggtta-ttttggttcagtttgattcgcacggtt 330  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||| ||||| ||||| |||||    
T  10904464 cggttcggttcgtgaaccattataatggttcggttatttttggttcggtttggttcgcgcggtt 10904527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 28733984 - 28734043
Alignment:
Q  164 taataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 223  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| | ||||||||| ||||||    
T  28733984 taataggcaagcaaacggttaaccaaaccataactttggtttagttcggttagttccaaa 28734043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 13947194 - 13947149
Alignment:
Q  161 ggttaataggtaagcaaatggttaaccaaaccataattttggttca 206  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||    
T  13947194 ggttaatatgtaagcaaatggttaaccgaaccataactttggttca 13947149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 15255070 - 15254947
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||||||    ||||||| |||| ||| |||||||| ||||||||| ||||||||| | ||||| | |||  |||| |||| ||| | ||    
T  15255070 ggttcggttcggttaatgaccaagcaaacggttgaccgaaccataactttggttcagttcggttagtttcaaaccttaaatggttcggttcagttattcc 15254971  T
Q  251 gaaccatttcaaaatttcggttcg 274  Q
    ||||||||| || | |||||||||    
T  15254970 gaaccattttaacacttcggttcg 15254947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 33690438 - 33690399
Alignment:
Q  268 cggttcgattcgtgaactattataatggttcggttatttt 307  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  33690438 cggttcggttcgtgaaccattataatggttcggttatttt 33690399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 36369864 - 36369899
Alignment:
Q  272 tcgattcgtgaactattataatggttcggttatttt 307  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36369864 tcgattcgtgatctattataatggttcggttatttt 36369899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 8259099 - 8259175
Alignment:
Q  203 ttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||| ||||||||| ||||||| | |||| |||  ||||||||||| | ||||||||||||  || |||||||||||    
T  8259099 ttcagttcggttagttccaaaccttaaacggtttggttcggttttctcaaaccatttcaaatatttggttcgattcg 8259175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 15649100 - 15649241
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| |||      
T  15649100 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagctcggttagctccaaacttaaaatg 15649199  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 274  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  15649200 gttcggttcgattttcccgaaccatttcaaaatttcggttcg 15649241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 32132013 - 32132145
Alignment:
Q  147 gttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttt 246  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||| ||||| |||    
T  32132013 gttcgattcggtatggttaataggtaagcaaatggttaaccaaaccataactttggctcaattcggttagttccaaacttgaaacggttcggttcgattt 32132112  T
Q  247 tcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||||| |||||||||| |||||| ||||    
T  32132113 tcccgaaccacttcaaaattttggttcggttcg 32132145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 133 - 274
Target Start/End: Complemental strand, 790235 - 790094
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||| ||||| || ||||||     
T  790235 aaatattggttttggttcggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaactccatacctgaaacg 790136  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 274  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  790135 gttcggttcgattttctcgaaccatttcaaaatttcggttcg 790094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 24186780 - 24186652
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| |||||||||||||    
T  24186780 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcggttttccc 24186681  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||||||||||||||||||| ||||    
T  24186680 gaaccatttcaaaatttcggttcggttcg 24186652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 34387555 - 34387681
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| |||||||||||||    
T  34387555 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcggttttccc 34387654  T
Q  251 gaaccatttcaaaatttcggttcgatt 277  Q
     ||||||||||||||||||||||||||    
T  34387655 aaaccatttcaaaatttcggttcgatt 34387681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 27842558 - 27842686
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| | ||| ||| ||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| ||||| |||||||    
T  27842558 ggttcggttcagttcatacgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttccc 27842657  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||||||||||||||||||| ||||    
T  27842658 gaaccatttcaaaatttcggttcggttcg 27842686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 34393753 - 34393625
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| | ||| ||| ||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| ||||| |||||||    
T  34393753 ggttcggttcagttcatacgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttccc 34393654  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||||||||||||||||||| ||||    
T  34393653 gaaccatttcaaaatttcggttcggttcg 34393625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 17305044 - 17305189
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| ||||||||||||||| || ||||| ||||||||| ||| |||||||| |||||||| ||||||||  ||||||||| | || || ||||||     
T  17305044 aaatattggttttggttcggttcagttcggttcataggtaagaaaacggttaaccgaaccataactttggttcggttcggttagttgcatacatgaaacg 17305143  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||| |||||||||| ||||||||||| |||||||||||||| ||||    
T  17305144 gttcggttcggtttt-ccgaaccattttaaaatttcggttcggttcg 17305189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 51236294 - 51236432
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||  ||||||||||||||||| ||||| ||||||||| |||  ||||||| |||||||| ||||||||| || |||||| |||| || ||||||     
T  51236294 aaatattgattttggttcggttcggttcggttcataggtaagaaaacagttaaccgaaccataactttggttcagtttggttaggtccatacctgaaacg 51236393  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggtt 272  Q
    |||| |||||||||| | ||||||||||||||||| ||||    
T  51236394 gttcggttcggtttt-ctgaaccatttcaaaattttggtt 51236432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 24918874 - 24918972
Alignment:
Q  161 ggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccattt 259  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| || |||||  ||||||||| |||| |||||||||  |||| |||||||||||    
T  24918874 ggttaataggtaagcaaatggttaaccaaaccataactttgattcagtttggttaattccaaactttaaacggttcagttcaatttttccgaaccattt 24918972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 33376654 - 33376538
Alignment:
Q  141 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 240  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||| |||||     ||||||||||||  |||| ||||||  | |||||||||| ||    
T  33376654 gttttggttcggttcggttcggttaataggcaagcaaatgattaaccgaacca-----ttggttcaattcaattagttccaaaacttaaacagttcaatt 33376560  T
Q  241 cggttttcccgaaccatttcaa 262  Q
    ||||| | | ||||||||||||    
T  33376559 cggttattctgaaccatttcaa 33376538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 279
Target Start/End: Complemental strand, 22871354 - 22871241
Alignment:
Q  166 ataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaat 265  Q
    ||||||||| ||| |||||||| |||||||| ||||||||| ||  |||| ||| | || | |||| ||||  |||||||||||| |||||| |||||||    
T  22871354 ataggtaagaaaacggttaaccgaaccataactttggttcagtttagttaactctatacctaaaacggttcgattcggttttcccaaaccatatcaaaat 22871255  T
Q  266 ttcggttcgattcg 279  Q
    |||||||| |||||    
T  22871254 ttcggttcaattcg 22871241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 32000723 - 32000583
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||  ||||||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||| |||| ||| | ||| ||||||  | ||||     
T  32000723 aaatattgattttggttcggtttggttcggttaataggtaaacaaatgattaatcgaaccataactttgattcagttcagatagttccaaatcttaaacg 32000624  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttc 273  Q
    |||| |||| ||||| |  ||||||||||| | ||||||||    
T  32000623 gttcggttcagtttttctaaaccatttcaacaattcggttc 32000583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 8066717 - 8066756
Alignment:
Q  268 cggttcgattcgtgaactattataatggttcggttatttt 307  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  8066717 cggttcggttcgtgaaccattataatggttcggttatttt 8066756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 9623917 - 9624050
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||     
T  9623917 aaatatttgttttggttcggttcgatatggttaataggtaagcaaatggttaaccaaaccataactttggttcaa-tcggttagctccaaacttaaaacg 9624015  T
Q  233 gttcagttcggttttcccgaaccatttcaaaattt 267  Q
    |||||||| ||||||||||||||||||||||||||    
T  9624016 gttcagtttggttttcccgaaccatttcaaaattt 9624050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 31365620 - 31365492
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| ||||||||| |||| ||||| |||||||    
T  31365620 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacttgaaacggttcggttcgattttccc 31365521  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
     ||||||||||||||||||||||| ||||    
T  31365520 aaaccatttcaaaatttcggttcggttcg 31365492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 43177244 - 43177118
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || | |||  ||||||||| ||||     
T  43177244 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttgattacttccaaactttaaacg 43177145  T
Q  233 gttcagttcggttttcccgaaccattt 259  Q
    |||| |||| |||||||||||||||||    
T  43177144 gttcggttcagttttcccgaaccattt 43177118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 2153988 - 2154118
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||||||||||||||||||| | |     ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || | | ||     
T  2153988 aaatatttgttttggttcggttcgattc-----ataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctaacacg 2154082  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttc 268  Q
    |||| ||||||||||||| |||  ||||||||||||    
T  2154083 gttcggttcggttttcccaaactttttcaaaatttc 2154118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 2153002 - 2152963
Alignment:
Q  268 cggttcgattcgtgaactattataatggttcggttatttt 307  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  2153002 cggttcggttcgtgaaccattataatggttcggttatttt 2152963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 262
Target Start/End: Original strand, 5270442 - 5270553
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    ||||||||  |||||||||  ||||||| ||||||   |||||||| ||||||| | ||| ||||| |||| || | ||||||||| |||| ||| | ||    
T  5270442 ggttcggtttggttaatagacaagcaaacggttaattgaaccataactttggtttagttcagttagttccataccttaaacagttcggttcagttattcc 5270541  T
Q  251 gaaccatttcaa 262  Q
    ||||||||||||    
T  5270542 gaaccatttcaa 5270553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 41193411 - 41193372
Alignment:
Q  268 cggttcgattcgtgaactattataatggttcggttatttt 307  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  41193411 cggttcggttcgtgaaccattataatggttcggttatttt 41193372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 23516250 - 23516104
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||      
T  23516250 aaatatttgttttggttcgattcggtatggttaataggtaagaaaatgattaaccaaaccataactttggttcagttcggttagctccaaacttaaaatg 23516151  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  23516150 gttcggttcgattttcccgaaccatttcaaaatttcggttcggttcg 23516104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 35653290 - 35653430
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||     
T  35653290 aaatatttgttttggtttggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggatagctccaaacttgaaacg 35653389  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 274  Q
    ||||  ||||||||| || |||||||| ||||||||||||||    
T  35653390 gttcgattcggtttt-ccaaaccattttaaaatttcggttcg 35653430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 38935910 - 38935775
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||     
T  38935910 aaatatttgttttggtttggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggtttagttcagttagctccaaacttgaaacg 38935811  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttc 273  Q
    |||||     ||||| |||||||||||||||||||||||||    
T  38935810 gttca-----gtttttccgaaccatttcaaaatttcggttc 38935775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 46171780 - 46171634
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| |||||||||||||||||| || || | ||||||| ||| |||||||| || ||||| ||||||||| |||||||||||||| || | ||||     
T  46171780 aaatattggttttggttcggttcggttcgattcacaggtaagaaaacggttaaccgaaacataactttggttcagttcggttagctccatacctaaaacg 46171681  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  46171680 gttcggttcggttttcccaaaccatttcaaaatttcggttcggttcg 46171634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 26464011 - 26463914
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaa 230  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||    
T  26464011 aaatatttgttttggttcggttcggtatgattaataggtaagcaaatggttaaccaaaccataactttggttcagtttggttagctccaaacatgaaa 26463914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 23393144 - 23393270
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||  || |||||| ||||     
T  23393144 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggttacttctaaactttaaacg 23393243  T
Q  233 gttcagttcggttttcccgaaccattt 259  Q
    |||| |||| |||||||||||||||||    
T  23393244 gttcggttcagttttcccgaaccattt 23393270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 49706384 - 49706510
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||| | || |||||  ||||||||| ||||     
T  49706384 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggtttagtttggttacttccaaactttaaacg 49706483  T
Q  233 gttcagttcggttttcccgaaccattt 259  Q
    |||| |||| |||||||||||||||||    
T  49706484 gttcggttcagttttcccgaaccattt 49706510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 12389295 - 12389167
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||| ||||||||| |||  ||||||| |||||||| ||||||||| ||||||||||||||  | | ||||||||| ||||||||||||     
T  12389295 ggttcggttcggttcataggtaagaaaacagttaaccgaaccataactttggttcagttcggttagctccatgccttaaacagttcggttcggttttcct 12389196  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    |||| |||||||||||||  |||||||||    
T  12389195 gaactatttcaaaatttcaattcgattcg 12389167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 31879528 - 31879656
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||| ||||||||| ||| |||||| | |||||||| ||||||||| |||||||||||| | ||||||||| |||| ||| | |||||||    
T  31879528 ggttcggttcggttcataggtaagaaaacggttaatcgaaccataactttggttcagttcggttagctctatacttgaaacggttcggtttgattttccc 31879627  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
     ||||||||||||||||| ||||| ||||    
T  31879628 aaaccatttcaaaatttcagttcggttcg 31879656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 9117307 - 9117436
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||||||||||||||| |||||  ||||| || |||| ||||||||||||| |||||||||||| ||||| || |||||  ||||||||| ||||     
T  9117307 aaatatttgttttggttcggatcggtttggttactaagtaaacaaatggttaaccgaaccataattttagttcagtttggttacttccaaactttaaacg 9117406  T
Q  233 gttcagttcggttttcccgaaccatttcaa 262  Q
    |||| |||| ||||| |||||| |||||||    
T  9117407 gttcggttcagtttttccgaactatttcaa 9117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 273
Target Start/End: Complemental strand, 27510900 - 27510778
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||||||||| ||||||| |||||||| |||||||| ||||||||| ||||||||| | ||||| | |||  |||| |||||||| | ||    
T  27510900 ggttcggttcggttaataggcaagcaaacggttaaccgaaccataactttggttcagttcggttagtttcaaaccttaaatggttcggttcggttattcc 27510801  T
Q  251 gaaccatttcaaaatttcggttc 273  Q
    |||||||||||| | ||||||||    
T  27510800 gaaccatttcaacacttcggttc 27510778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 6582461 - 6582333
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||| ||||||| | ||| |||||||| ||| |||| ||||||||| |||||||||||| | || | |||| || | |||||||||||||    
T  6582461 ggttcggttcggttcataggtaggaaaacggttaaccgaactataactttggttcagttcggttagctctataccttaaacggtgcggttcggttttccc 6582362  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    ||| ||||||||||||| |||||| ||||    
T  6582361 gaatcatttcaaaattttggttcggttcg 6582333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 273
Target Start/End: Original strand, 16048074 - 16048193
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta--gctccaaacttgaaacagttcagttcggttttc 248  Q
    |||| ||| ||||| ||||| ||| ||| || |||||||||||||| ||||||||||||||||||  |||||| |  |||||| ||||     |||||||    
T  16048074 ggtttggttcggttcataggcaaggaaacggataaccaaaccataactttggttcaattcggttatagctccataactgaaacggttc-----ggttttc 16048168  T
Q  249 ccgaaccatttcaaaatttcggttc 273  Q
    |||||||||||||||||||||||||    
T  16048169 ccgaaccatttcaaaatttcggttc 16048193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 48995828 - 48995737
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcg 242  Q
    |||| ||| ||||||||||| ||| |||||||||||| |||||||||||||||||| || |||||  ||||||| | |||| |||| |||||    
T  48995828 ggtttggttcggttaataggcaagaaaatggttaaccgaaccataattttggttcagtttggttaattccaaaccttaaacggttcggttcg 48995737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 2736792 - 2736707
Alignment:
Q  160 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggtt 245  Q
    ||||||||||| || ||||  ||||||| |||||||| ||||||||| ||||||||| ||||||  | |||| |||| ||||||||    
T  2736792 cggttaataggcaaacaaacagttaaccgaaccataactttggttcagttcggttagttccaaatcttaaacggttcggttcggtt 2736707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 47996680 - 47996589
Alignment:
Q  148 ttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 240  Q
    ||||||||||| ||||| ||||||||| |||| ||||||| ||||| || ||||||||| ||| ||||  ||||||| || ||| ||||||||    
T  47996680 ttcggttcggttcggttcataggtaagaaaattgttaaccgaacca-aactttggttcagttcagttaattccaaacctgtaactgttcagtt 47996589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 6583940 - 6583978
Alignment:
Q  269 ggttcgattcgtgaactattataatggttcggttatttt 307  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  6583940 ggttcggttcgtgaaccattataatggttcggttatttt 6583978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 26460757 - 26460712
Alignment:
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattc 278  Q
    |||| |||| |||||||| |||||||||||||||||| ||||||||    
T  26460757 gttcggttcagttttcccaaaccatttcaaaatttcgattcgattc 26460712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 32955948 - 32955809
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||| ||| ||||||     
T  32955948 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatgattaaccaaaccataactttgattcagttcggttagctcccaacctgaaacg 32955849  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggtt 272  Q
    |||| |||||||||| ||||||||||||||||||| ||||    
T  32955848 gttcggttcggtttttccgaaccatttcaaaattttggtt 32955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 28747689 - 28747551
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||       |||||    
T  28747689 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttagttcagttcggttagctcc-------aaaca 28747597  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    ||||  ||| | ||||| |||||||||||||||||||||||||||||    
T  28747596 gttcgattc-gatttcctgaaccatttcaaaatttcggttcgattcg 28747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 3523283 - 3523155
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||  ||||| |||||||    
T  3523283 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggtttggttcgattttccc 3523184  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||||||||||||||||||||||||    
T  3523183 gaaccatttcaaaatttcggttcgattcg 3523155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 31069254 - 31069140
Alignment:
Q  160 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccattt 259  Q
    ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||  |||||||||| |||| |||||||||||    
T  31069254 cggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaatggttcagttcgatttttccgaaccattt 31069155  T
Q  260 caaaatttcggttcg 274  Q
    |||||||||||||||    
T  31069154 caaaatttcggttcg 31069140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 31508461 - 31508561
Alignment:
Q  161 ggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttc 260  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||| || |||||  ||||||||| |||||||||||||| ||||| ||||||||||||    
T  31508461 ggttaataggtaagcaaatggttaacagaaccataactttggttcagtttggttacttccaaactttaaacagttcagttcagtttttccgaaccatttc 31508560  T
Q  261 a 261  Q
    |    
T  31508561 a 31508561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 26818356 - 26818497
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| |||||||||||||||| |  ||||  ||| |||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||      
T  26818356 aaatattggttttggttcggttcgatttggttcttagataagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaa-- 26818453  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
       | ||||| |||||||||||||||||||||||| |||||| ||||    
T  26818454 ---cggttcgattttcccgaaccatttcaaaattttggttcggttcg 26818497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 33062040 - 33062142
Alignment:
Q  160 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccattt 259  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||| ||||||||| | ||||  | |||| ||||||||||||| | ||||| |||||    
T  33062040 cggttaataggcaagcaaacagttaaccgaaccataattttggttcagttcggttagtttcaaatcttaaacggttcagttcggttattccgaaacattt 33062139  T
Q  260 caa 262  Q
    |||    
T  33062140 caa 33062142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 8465256 - 8465186
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggt 203  Q
    |||||||| |||| ||||||||||||  | |||||||||||||||| |||||||| || ||||| ||||||    
T  8465256 aaatatttattttagttcggttcggtttgattaataggtaagcaaacggttaaccgaatcataactttggt 8465186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 42545710 - 42545778
Alignment:
Q  141 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtt 214  Q
    ||||||||||||||     ||||||||| | ||||||| |||||||| |||||||| ||||||||| |||||||    
T  42545710 gttttggttcggtt-----cggttaatatgcaagcaaacggttaaccgaaccataactttggttcagttcggtt 42545778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 44773937 - 44774078
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    |||||||| |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||| |||      
T  44773937 aaatatttattttggttcggttcggtatggttaatagttaagcaaatggttaactaaaccataactttggttcagttcggttaactccaaacttaaaatt 44774036  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 274  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  44774037 gttcggttcggtttttgcgaaccatttcaaaatttcggttcg 44774078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 18021744 - 18021856
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||| ||| ||||     
T  18021744 aaatatttgttttggttcggttcggtatggttaataggtaaacaaatggttaaccaaaccataactttggttgagttcggttagctccaaccttaaaacg 18021843  T
Q  233 gttcagttcggtt 245  Q
    |||| ||||||||    
T  18021844 gttcggttcggtt 18021856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 40292891 - 40293019
Alignment:
Q  131 ataaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaa 230  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||  ||||||||| |||    
T  40292891 ataaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggttacttccaaactttaaa 40292990  T
Q  231 cagttcagttcggttttcccgaaccattt 259  Q
    | |||| |||| |||||||||||||||||    
T  40292991 cggttcggttcagttttcccgaaccattt 40293019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 50309148 - 50309003
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| | |||| ||||||||||| ||||| ||| ||||| ||| |||||||| || ||||| ||||||||| |||| ||||||||| || | ||||     
T  50309148 aaatattgggtttgattcggttcggttcggttcataagtaagaaaacggttaaccgaaacataactttggttcagttcgattagctccatacctaaaacg 50309049  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    |||| ||||||||||  ||||||||||||||||||||||||| ||||    
T  50309048 gttcggttcggtttt-tcgaaccatttcaaaatttcggttcggttcg 50309003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 13857195 - 13857073
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||| ||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||| | || || |||||| |||| |||||||||| ||    
T  13857195 ggtttggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagttgcatacctgaaacggttcggttcggtttt-cc 13857097  T
Q  251 gaaccatttcaaaatttcggttcg 274  Q
    ||||||||| ||||||||||||||    
T  13857096 gaaccattttaaaatttcggttcg 13857073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 10222998 - 10223139
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| |||||||||||||||| |  ||||  ||| |||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||      
T  10222998 aaatattggttttggttcggttcgatttggttcttagataagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaa-- 10223095  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
       | ||||| |||||||||||||||||||||||| |||||| ||||    
T  10223096 ---cggttcgattttcccgaaccatttcaaaattttggttcggttcg 10223139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 32863566 - 32863685
Alignment:
Q  153 ttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccga 252  Q
    |||||| |||||||||| || |||||||||||||| |||||||| ||||||||| ||||||||| ||||||| |  ||| |||| ||| |||| | ||||    
T  32863566 ttcggttcggttaatagatatgcaaatggttaaccgaaccataactttggttcagttcggttagttccaaaccttgaacggttcggtttggttattccga 32863665  T
Q  253 accatttcaaaatttcggtt 272  Q
    |||||||||| | |||||||    
T  32863666 accatttcaacacttcggtt 32863685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 44416396 - 44416515
Alignment:
Q  142 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttc 241  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||||||||||  ||||||||| || | |||  |||| |||| |||  |||| ||||    
T  44416396 ttttggttcggttcggtttggttaataggtaagtaaatggttaaccaaaccatagctttggttcagtttgattacttccagactttaaatggttcggttc 44416495  T
Q  242 ggttttcccgaaccatttca 261  Q
     ||||| |||||||||||||    
T  44416496 agtttttccgaaccatttca 44416515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 13840878 - 13840785
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaactt 226  Q
    |||||||||||||||||||| ||| |  ||||||||||||| ||||||||||||| |||||||| ||||||||| || |||||  |||||||||    
T  13840878 aaatatttgttttggttcggatcgatttggttaataggtaaacaaatggttaaccgaaccataactttggttcagtttggttatttccaaactt 13840785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 279
Target Start/End: Original strand, 5938085 - 5938198
Alignment:
Q  166 ataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaat 265  Q
    ||||||||| ||| |||||||| |||||||| ||||||||| ||||  || |  || || |||||| |||| |||| ||||| |||||||||||||||||    
T  5938085 ataggtaagaaaacggttaaccgaaccataactttggttcagttcgtataccagcatacctgaaacggttcggttcagtttttccgaaccatttcaaaat 5938184  T
Q  266 ttcggttcgattcg 279  Q
    ||||||||| ||||    
T  5938185 ttcggttcggttcg 5938198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 33639403 - 33639523
Alignment:
Q  142 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttc 241  Q
    ||||||||||||||| | ||||||||||| ||||||| |||||| | |||||||| ||||||||| ||||||||  || |||| | |||| |||| | ||    
T  33639403 ttttggttcggttcgattcggttaatagggaagcaaacggttaatcgaaccataactttggttcatttcggttaattcaaaaccttaaacggttcggctc 33639502  T
Q  242 ggttttcccgaaccatttcaa 262  Q
    | || | ||||||||||||||    
T  33639503 gattattccgaaccatttcaa 33639523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 50303218 - 50303326
Alignment:
Q  154 tcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaa 253  Q
    ||||| ||||||||||| ||||||| |||||||| || ||||| ||||||||| ||||| ||||| ||||| | |||| |||| |||||||| | || ||    
T  50303218 tcggttcggttaataggcaagcaaacggttaaccgaaacataactttggttcagttcggatagcttcaaaccttaaacggttcggttcggttattccaaa 50303317  T
Q  254 ccatttcaa 262  Q
    |||||||||    
T  50303318 ccatttcaa 50303326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 55325311 - 55325189
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||||| ||| ||||||| |||||  | |||||||| ||||||||| || |||||| | ||||| | |||| ||||||||||||| | ||    
T  55325311 ggttcggttcggttaa-aggcaagcaaacggttagacgaaccataactttggttcagttaggttagtttcaaaccttaaacggttcagttcggttattcc 55325213  T
Q  251 gaaccatttcaaaatttcggttcg 274  Q
    |||||||||||| | |||||||||    
T  55325212 gaaccatttcaacacttcggttcg 55325189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 34122365 - 34122479
Alignment:
Q  160 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccattt 259  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| | ||||| ||| ||||||  | |||| |||  |||| ||||| |  ||||||||    
T  34122365 cggttaataggtaagcagatggttaaccaaaccataactttggttgagttcggatagttccaaatcttaaacggtttggttcagtttttctaaaccattt 34122464  T
Q  260 caaaatttcggttcg 274  Q
    ||| | |||||||||    
T  34122465 caacaattcggttcg 34122479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 40929465 - 40929327
Alignment:
Q  141 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 240  Q
    ||||| |||||||||||| | ||||| ||| | |||||  ||||||| |||||||| ||||||||| ||||||||| ||||||| | |||| ||||||||    
T  40929465 gttttagttcggttcggttcagttaacaggcacgcaaacagttaaccgaaccataactttggttcagttcggttagttccaaaccttaaacggttcagtt 40929366  T
Q  241 cggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    || || | || ||| ||||||| | |||| |||| ||||    
T  40929365 cgattattccaaacgatttcaacacttcgattcggttcg 40929327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 50328335 - 50328467
Alignment:
Q  142 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttc 241  Q
    ||||||||||||||||| ||||||  | || |  ||| |||||||| |||||||| ||||||||| ||| ||| | || |||  | |||| |||| ||||    
T  50328335 ttttggttcggttcggttcggttagcaagttacgaaacggttaaccgaaccataactttggttcagttcagttcgttctaaatcttaaacggttcggttc 50328434  T
Q  242 ggttttcccgaaccatttcaaaatttcggttcg 274  Q
    |||| | |||||||||||||| |||||||||||    
T  50328435 ggttattccgaaccatttcaacatttcggttcg 50328467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 5293301 - 5293235
Alignment:
Q  139 ttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttc 205  Q
    |||||||| ||||||| |||  ||||||||||||||||||||||||||| |||||||  ||||||||    
T  5293301 ttgttttgattcggtttggtttggttaataggtaagcaaatggttaaccgaaccatagctttggttc 5293235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 8600276 - 8600202
Alignment:
Q  135 atatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaatt 209  Q
    ||||||||||||||||||||| ||  | || ||||||||| ||||||||||||  ||||||| |||| |||||||    
T  8600276 atatttgttttggttcggttcagtttgattcataggtaagtaaatggttaaccgtaccataactttgattcaatt 8600202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 25639412 - 25639494
Alignment:
Q  163 ttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggtt 245  Q
    |||||| | |||||||||||||||| |||||||| ||||||||| ||||||||  | ||||| | |||| ||| |||||||||    
T  25639412 ttaataagcaagcaaatggttaaccgaaccataactttggttcagttcggttaatttcaaaccttaaacggtttagttcggtt 25639494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 20254758 - 20254825
Alignment:
Q  137 atttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggtt 204  Q
    |||||||||| ||||| |||||  | |||||||||| |||||||||||||| || ||||| |||||||    
T  20254758 atttgttttgattcggatcggtttgattaataggtatgcaaatggttaaccgaaacataactttggtt 20254825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 44772814 - 44772775
Alignment:
Q  268 cggttcgattcgtgaactattataatggttcggttatttt 307  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  44772814 cggttcggttcgtgaactattataatgattcggttatttt 44772775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 7364 - 7510
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || ||||||     
T  7364 aaatattggttttggttcggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacgtgaaacg 7463  T
Q  233 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 279  Q
    ||||  ||| |||||||||||||||||||||||||||||||| ||||    
T  7464 gttcgattcagttttcccgaaccatttcaaaatttcggttcggttcg 7510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 6142 - 6093
Alignment:
Q  268 cggttcgattcgtgaactattataatggttcggtta-ttttggttcagtt 316  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  6142 cggttcggttcgtgaaccattataatggttcggttatttttggttcagtt 6093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 27596620 - 27596507
Alignment:
Q  133 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||     
T  27596620 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataattttggttcagttcggttagctgccaacatgaaacg 27596521  T
Q  233 gttcagttcggttt 246  Q
    |||| |||||||||    
T  27596520 gttcggttcggttt 27596507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 17154294 - 17154422
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||| ||||| || |||||| |||  ||||||||||||     
T  17154294 ggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaactccatacctgaaacggtttggttcggttttcct 17154393  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||||||||||||||||||| ||||    
T  17154394 gaaccatttcaaaatttcggttcggttcg 17154422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 33702688 - 33702565
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| |||||  |||||||| |||||||||||| |||||||| ||||||||| |||||||||||||| || |||||     | |||||||||||||    
T  33702688 ggttcggttcggttcttaggtaagaaaatggttaaccgaaccataactttggttcagttcggttagctccatacctgaaa-----cggttcggttttccc 33702594  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
     ||||||||||||||||||||||| ||||    
T  33702593 aaaccatttcaaaatttcggttcggttcg 33702565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 23111435 - 23111312
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||||||||  ||||||||| |||||| |||||||| |||| |||| ||||||||| ||||||| | |||| |||| |||||||| | ||    
T  23111435 ggttcggttcggttaatagacaagcaaatgattaaccgaaccataactttgattcagttcggttagttccaaacatcaaacggttcggttcggttattcc 23111336  T
Q  251 gaaccatttcaaaatttcggttcg 274  Q
    |||||||||||| | |||||||||    
T  23111335 gaaccatttcaacacttcggttcg 23111312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 29092773 - 29092890
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    ||||||||  |||| |||| |||| ||| ||||| || |||||||| ||||||||| |||||||||||||| || |||||| |||| ||||| |||||||    
T  29092773 ggttcggtttggttcatagataagaaaacggttatccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttccc 29092872  T
Q  251 gaaccatttcaaaatttc 268  Q
    |||| |||||||||||||    
T  29092873 gaacgatttcaaaatttc 29092890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 280
Target Start/End: Original strand, 12356342 - 12356471
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| |||| |||||  |||||||  |||||||||||||||| ||||||||||||||||||  ||||||| | |||| |||| ||||||||   ||    
T  12356342 ggttcggttcggtcaatagccaagcaaactgttaaccaaaccataactttggttcaattcggttatttccaaaccttaaacggttcggttcggttactcc 12356441  T
Q  251 gaaccatttcaaaatttcggttcgattcgt 280  Q
    |||||||||||| | |||| |||| |||||    
T  12356442 gaaccatttcaacacttcgattcggttcgt 12356471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 29397942 - 29398049
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    ||||||||  ||||||||||||| ||||||||||||| |||||||| | | ||||| || |||||  ||||||||| ||||||||||||||  |||| ||    
T  29397942 ggttcggtttggttaataggtaaacaaatggttaaccgaaccataa-tgtcgttcagtttggttacttccaaactttaaacagttcagttcaatttttcc 29398040  T
Q  251 gaaccattt 259  Q
    |||||||||    
T  29398041 gaaccattt 29398049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 8636143 - 8636226
Alignment:
Q  141 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaac 224  Q
    ||||||||| ||||| || ||||||||||||||||||| |||||||| | |||||| |||||||||  |||||||| |||||||    
T  8636143 gttttggtttggttcagttcggttaataggtaagcaaacggttaaccgagccataactttggttcagctcggttagttccaaac 8636226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 27597388 - 27597451
Alignment:
Q  268 cggttcgattcgtgaactattataatggttcggtta-ttttggttcagtttgattcgcacggtt 330  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||| | ||||| |||||    
T  27597388 cggttcggttcgtgaaccattataatggttcggttatttttggttcagttcggttcgcgcggtt 27597451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 1800909 - 1801029
Alignment:
Q  153 ttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccga 252  Q
    |||||| ||||||||||| ||  ||| |||||||  ||| |||| ||||||||| |||| |||| ||||||| | |||||||||  |||| || | | ||    
T  1800909 ttcggttcggttaataggcaaataaacggttaactgaacgataactttggttcagttcgattagttccaaaccttaaacagttcgattcgattattctga 1801008  T
Q  253 accatttcaaaatttcggttc 273  Q
    ||||||| || ||||||||||    
T  1801009 accattttaacatttcggttc 1801029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 33703832 - 33703868
Alignment:
Q  271 ttcgattcgtgaactattataatggttcggttatttt 307  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  33703832 ttcggttcgtgaaccattataatggttcggttatttt 33703868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 54069 - 54197
Alignment:
Q  151 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 250  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||||| | | || |||| ||| |||| | |     
T  54069 ggttcggttcggttaataggtaagcaaacggttaaccgaaccataactttggttcagttcggttagttccaaaccttagacggttcggtttggttattct 54168  T
Q  251 gaaccatttcaaaatttcggttcgattcg 279  Q
    |||||||||||| | ||| |||| |||||    
T  54169 gaaccatttcaatacttcagttcaattcg 54197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University