View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10624_4 (Length: 437)
Name: NF10624_4
Description: NF10624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10624_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 23 - 437
Target Start/End: Original strand, 5399212 - 5399626
Alignment:
| Q |
23 |
agcacagaatcacttccttatacatgtttcagttttcagacatgtggatggatagaacatagaacatagtagaacacagaactgaaacaagttttgttgt |
122 |
Q |
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| T |
5399212 |
agcacagaatcacttccttatatatgtttcagttttcagacatgtggatggatagaacatagaacatagtagaacacagaactgaaacaagttttgttgt |
5399311 |
T |
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| Q |
123 |
tgaactcaaactcaaactcaaacacagcaatgtcttcaatcacatgcataactcaccaacccatcatttcaaattctaagtctttaatcacttcacaagt |
222 |
Q |
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| T |
5399312 |
tgaactcaaactcaaacacaa------caatgtcttcaatcacatgcataactcaccaacccattatttcaaattctaagtctttaatcacttcgcaagt |
5399405 |
T |
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| Q |
223 |
ttcttccacaaacttgtcttcttctcggtttcttggtattagagttaagagtgttggatg------ctcaagcttcacctctaaatttggaccctctaat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
5399406 |
ttcttccacaaacttgtcttcttctcggtttcttggtattagagttaagagtgttcgatggtcaagctcaagcttcacctctaaatttggaccctctaat |
5399505 |
T |
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| Q |
317 |
gggtcaagattcacatgctggttcaagtttggtaaaaatggtgttgatgctgaaggtgctggtatttatggtagtcagtctcgtgatgattttgatagag |
416 |
Q |
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| T |
5399506 |
gggtcaagattcacatgctggttcaagtttggtaaaaatggtgttgatgctgaaggtgctggtatttatggtagtcagtctcgtgatgattttgatagag |
5399605 |
T |
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| Q |
417 |
atgatgttgaacaggtacatt |
437 |
Q |
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| T |
5399606 |
atgatgttgaacaggtacatt |
5399626 |
T |
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