View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10624_6 (Length: 394)
Name: NF10624_6
Description: NF10624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10624_6 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 11848686 - 11848319
Alignment:
| Q |
17 |
tagggattgccaaagtaaccccagaagcattggcattgccgaccagtgtttctgttatctatggatgtaactttggaatcataacaatttgaatatgaat |
116 |
Q |
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| T |
11848686 |
tagggattgccaaagtaacccgagaagcattggcattgccgaccagtgtttctgttatttatggatgtaacttgggaatcataacaatttgaatatgaat |
11848587 |
T |
|
| Q |
117 |
ctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaacttattaaaatt |
216 |
Q |
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| T |
11848586 |
ctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaacttattaaaatt |
11848487 |
T |
|
| Q |
217 |
ctcaagataataagtactcaaatatggtgacaacccatcaaaagatacccaacgacgacttaaaatcaaagcatagctacactcactaatatttggtccc |
316 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848486 |
ctcaagataataagtactcaaatatgatgacaacccatcaaaatatacccaacgacgacttaaaatcaaagcatagctacactcactaatatttggtccc |
11848387 |
T |
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| Q |
317 |
cttaaaccttgtaacgtcgcattatattctgaaagatgcataggcaatgaagtttcacaacaatatct |
384 |
Q |
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| T |
11848386 |
cttaaaccttgtaacgtcgcattatattctgaaagatgcataggcaatgaagtttcacaacaatatct |
11848319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 11843962 - 11843634
Alignment:
| Q |
17 |
tagggattgccaaagtaaccccagaagcattggcattgccgaccagtgtttctgttatctatggatgtaactttggaatcataacaatttgaatatgaat |
116 |
Q |
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||||||||||| ||||||| || ||||||| |||| |||||||||| ||||||||| || ||||||||||||||||||||||||| |||||| |
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| T |
11843962 |
tagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaactttggaatcataacaat------atgaat |
11843869 |
T |
|
| Q |
117 |
ctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaacttattaaaatt |
216 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
11843868 |
ctgaaggaagttgaaatgtcgaattaaccaa------------aatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaa-- |
11843783 |
T |
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| Q |
217 |
ctcaagataataagtactcaaatatggtgacaacccatcaaaagatacccaacgacgacttaaaatcaaagcatagctacactcactaatatttggtccc |
316 |
Q |
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||||||||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||||| | |||| || || | |
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| T |
11843782 |
-------------gtactcaaatatg------acccatcaaaagatatccaattatcacttaaaatcaaagcataactacactgatcaatactttgttcg |
11843702 |
T |
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| Q |
317 |
cttaaaccttgtaacgtcgcattatattctgaaagatgcataggcaatgaagtttcacaacaatatct |
384 |
Q |
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||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
11843701 |
cttaaaccttgaaacgttgcattatattccgaaagatgcgtaggcaatgaagtttcacaacaatatct |
11843634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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