View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10624_9 (Length: 369)
Name: NF10624_9
Description: NF10624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10624_9 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 49006190 - 49006033
Alignment:
| Q |
45 |
ggtgggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggagaatgctccgcgggggtcag----ggaggctgcttgatgtaacca |
140 |
Q |
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| T |
49006190 |
ggtgggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggagaatgctccgcgggggtcagtcagggaggctgcttgatgtaacca |
49006091 |
T |
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| Q |
141 |
tttttaaaccctcattttaatttcagaaatgttatttagcacaatttttcaaaattgt |
198 |
Q |
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| T |
49006090 |
tttttaaaccctcattttaatttcagaaatgttatttagcacaatttttcaaaattgt |
49006033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 212 - 369
Target Start/End: Complemental strand, 49005830 - 49005673
Alignment:
| Q |
212 |
tattagaataagaccgaactttaaaaactgaaaaaacacttacaaagttacttattcatagccatcaaagccttgcaataagtgaatcaactctttacga |
311 |
Q |
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| T |
49005830 |
tattaaaataagaccgaactttaaaaactgaaaaaacgcttacaaagttacttattgatagccatcaaagccttgcgataagtgaatcaactccttacga |
49005731 |
T |
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| Q |
312 |
gttgattcaatatttattggcaacaacactaacannnnnnncttttcatagttaacgt |
369 |
Q |
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| T |
49005730 |
gttgcttcaatatttattggcaacaacactaacatttttttcttttcatagttaacgt |
49005673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 38178515 - 38178425
Alignment:
| Q |
41 |
gctaggtgggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggaga--atgctccgcgggggtcagggaggctgct |
129 |
Q |
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| T |
38178515 |
gctaggtggaagaatgttgaggtggaggagagtgttagacggcacggtggagaagaggagaatatgctccgcgggggtcagggaggttgct |
38178425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 38178383 - 38178340
Alignment:
| Q |
130 |
tgatgtaaccatttttaaaccctcattttaatttcagaaatgtt |
173 |
Q |
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| T |
38178383 |
tgatgtaaccatttctaaaccctcattttaatttcacaaatgtt |
38178340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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