View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10624_low_1 (Length: 249)
Name: NF10624_low_1
Description: NF10624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10624_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 40391086 - 40391217
Alignment:
| Q |
119 |
aacaagattattaatcgctaaaagtcaagccgatgcatctaatagtaaattgtgtcattaataaagctcacacgagcacataattag-ttttattttatt |
217 |
Q |
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| T |
40391086 |
aacaagattattaattgctaaaagtcaagccgatgcatctaatagtaaattgtgtcattaataaagctcacacgagcacataattagtttttattttatt |
40391185 |
T |
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| Q |
218 |
ttatcaaagttatcaagaacacaaacagccgc |
249 |
Q |
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| T |
40391186 |
ttatcaaagttatcaagaacacaaacagccgc |
40391217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 40390925 - 40391038
Alignment:
| Q |
20 |
ttagcttcttatcaccaaatccaattctacaattcaaatcctattcaaatcaaatacaaattaagtttctactgacattgagagccnnnnnnnaacatta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40390925 |
ttagcttcttatcaccaaatccaattctacaattcaaatcctattcaaatcaaatacaaattaagtttctactgacattgagagcctttttttaacatta |
40391024 |
T |
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| Q |
120 |
acaagattattaat |
133 |
Q |
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| T |
40391025 |
acaagattattaat |
40391038 |
T |
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