View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_14 (Length: 356)
Name: NF10625_high_14
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 89 - 346
Target Start/End: Complemental strand, 30718266 - 30718010
Alignment:
| Q |
89 |
attgtctatggtggttgtcaaaaaattctgacaagtcattctgccatggtagccatttgataacactggtgaatacttgcattatataattcatttagta |
188 |
Q |
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| T |
30718266 |
attgtctatggtggttgtcaaaaaattcagacaagtcattctgccatggtagccatttgataacactggtgaatacttgcattatataattcatttagta |
30718167 |
T |
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| Q |
189 |
ttgcatacagggtgacgtaaatgacaactttttaactgatctgatagcttttcttctccataannnnnnncaaaaataatatctacctgctgccttctgt |
288 |
Q |
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| T |
30718166 |
ttgcatacagggtgacgtaaatgacaactttttaa-tgatctgatagcttttcttctccataatttttttcaaaaataatatctacctgctgccttctgt |
30718068 |
T |
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| Q |
289 |
ttgattcacgtatggatatgacacacaattgtggctcatccaatgtcacgtccctttg |
346 |
Q |
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| T |
30718067 |
ttgattcacgtatgtatatgacacacaattgtggctcatccaatgtcacgtctctttg |
30718010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30718312 - 30718263
Alignment:
| Q |
1 |
atggtgaaatatggcagaagactaaaatacaccatagaaacgcgccattg |
50 |
Q |
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| T |
30718312 |
atggtgaaatatggcagaagactaaaatacaccatagaaatgcgccattg |
30718263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 29726883 - 29726967
Alignment:
| Q |
30 |
caccatagaaacgcgccattgcggcctatggacacaccatggcaggcatcccttcacgaattgtctatggtggttgtcaaaaaat |
114 |
Q |
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| T |
29726883 |
caccatataaacacgccattgcagcctatggtgttgccatggcgggcatcccttcacaaattgtctatggtggttatccaaaaat |
29726967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 12113044 - 12113091
Alignment:
| Q |
66 |
ccatggcaggcatcccttcacgaattgtctatggtggttgtcaaaaaa |
113 |
Q |
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| T |
12113044 |
ccatggcgggcatcccttcacaaatcggctatggtggttgtcaaaaaa |
12113091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 30041841 - 30041762
Alignment:
| Q |
32 |
ccatagaaacgcgccattgcggcctatggacacaccatggcaggcatcccttcacgaattgtctatggtggttgtcaaaa |
111 |
Q |
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| T |
30041841 |
ccatacaaacacgtcattgcggcctatggtgccgccatggcgggcatcccttcacagattgtctatggcagttgtcaaaa |
30041762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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