View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_17 (Length: 336)
Name: NF10625_high_17
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 12514654 - 12514333
Alignment:
| Q |
15 |
gggaagataagtatgggagtgggggtaggaggtggtggtggatgagtcataatataaggtggaaaagaagatgggaaatttattactaactattatatca |
114 |
Q |
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| T |
12514654 |
gggaagataagtatgggagtgggggtaggaggtggtggtggatgagtcataatataaggtggaaaagaagatgggaaatttattactaactattatatca |
12514555 |
T |
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| Q |
115 |
agatttagatagaatgcaaggttgaggttgaagttcaaatttgattaaggtagtaacaagtaaatttgattaaaatggagtgtttcttggtttgagtggt |
214 |
Q |
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| T |
12514554 |
agatttagatagaatgcaaggttgaggttgaagttcaaatttgattaaggtagtaataagtaaatttgattaaaatggagtgtttcttggtttgagtggt |
12514455 |
T |
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| Q |
215 |
ttggagttgttatggattaatttctcctaagaaagttgtgagtgattacaacatttgatatactactcatactagctgacttttgaacttagagcagaac |
314 |
Q |
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| T |
12514454 |
ttggagttgttatggattaatttctcctaagaaagttgtgagtgattacaacatttgatatactactcatactagctgacttttgaacttagagcagaac |
12514355 |
T |
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| Q |
315 |
agagaaaactctcacaaaggtc |
336 |
Q |
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| T |
12514354 |
agagaaaactctcacaaaggtc |
12514333 |
T |
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