View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10625_high_27 (Length: 277)

Name: NF10625_high_27
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10625_high_27
NF10625_high_27
[»] chr3 (5 HSPs)
chr3 (71-259)||(43597857-43598048)
chr3 (1-75)||(43597757-43597835)
chr3 (177-251)||(33068264-33068338)
chr3 (177-253)||(27786528-27786604)
chr3 (177-213)||(8380471-8380507)
[»] chr5 (3 HSPs)
chr5 (182-232)||(7135329-7135379)
chr5 (183-238)||(39231871-39231926)
chr5 (177-238)||(38244157-38244218)
[»] chr2 (4 HSPs)
chr2 (177-251)||(34360838-34360912)
chr2 (184-251)||(36446985-36447052)
chr2 (183-261)||(33853814-33853892)
chr2 (178-234)||(34138768-34138824)
[»] chr1 (4 HSPs)
chr1 (190-232)||(5091755-5091797)
chr1 (175-234)||(42074203-42074262)
chr1 (180-234)||(11016664-11016718)
chr1 (178-224)||(46673860-46673906)
[»] chr4 (6 HSPs)
chr4 (177-234)||(25129762-25129818)
chr4 (177-238)||(32125410-32125471)
chr4 (177-238)||(47493208-47493269)
chr4 (196-238)||(51333452-51333494)
chr4 (185-238)||(33004250-33004303)
chr4 (177-213)||(25233615-25233651)
[»] chr8 (4 HSPs)
chr8 (177-236)||(108202-108261)
chr8 (181-234)||(11334255-11334308)
chr8 (181-234)||(30857305-30857358)
chr8 (196-252)||(4079554-4079610)
[»] chr7 (3 HSPs)
chr7 (189-255)||(16970312-16970378)
chr7 (177-238)||(42926992-42927053)
chr7 (183-236)||(47877881-47877934)
[»] chr6 (2 HSPs)
chr6 (177-251)||(7055630-7055704)
chr6 (184-234)||(26478521-26478571)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 71 - 259
Target Start/End: Original strand, 43597857 - 43598048
Alignment:
Q  71 ttgttaatgacatgacaaagtttcacatgccactaatattcatgtaagtgtgttagattatcgatctt---tgcgaggttattacacaaaaatgcagcta 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||| |||||||||||||||||||    
T  43597857 ttgttaatgacatgacaaagtttcacatgccactaatattcatgtaagtgtgttagattatcgatcttctttgagaggttcttacacaaaaatgcagcta 43597956  T
Q  168 ttgaacttaatagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgtgtattt 259  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  43597957 ttgaacttaatagatcaaatatattaggtattcaataaacttaaaaagtagttttttgtttataaatatgagcagatgaagtatgtgtattt 43598048  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43597757 - 43597835
Alignment:
Q  1 tagttcatgttcggtgtgatactc----acaatcatgaattagcaaataccttagaaggtcatccttatatgtgttgtt 75  Q
    |||||||||||| |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43597757 tagttcatgttcagtgtgatactcactcacaatcatgaattagcaaataccttagaaggtcatccttatatgtgttgtt 43597835  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 33068264 - 33068338
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 251  Q
    ||||| ||||||||||| ||||||||| ||  |||||  || |||||||||||||||||||| | ||||||||||    
T  33068264 atagaccaaatatattaaatattcaatgaatgtaaaaaataattttttgtttataaatatgatcggatggagtat 33068338  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 27786528 - 27786604
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgt 253  Q
    ||||| |||||||||||| |||||||| ||||||||| || || ||||| |||||||| ||| | || |||||||||    
T  27786528 atagaccaaatatattaggtattcaatgaacctaaaaagttgtgttttgcttataaatgtgatcggagggagtatgt 27786604  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 8380507 - 8380471
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaa 213  Q
    |||||||||||||||||  ||||||||||||||||||    
T  8380507 atagatcaaatatattaattattcaataaacctaaaa 8380471  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 7135329 - 7135379
Alignment:
Q  182 tcaaatatattagatattcaataaacctaaaaggtagttttttgtttataa 232  Q
    ||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  7135329 tcaaatatattagttattcaataaatctaaaacgtagttttttgtttataa 7135379  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 39231871 - 39231926
Alignment:
Q  183 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 238  Q
    |||||| ||| |||||| ||| |||||||||  |||||||||||||||||||||||    
T  39231871 caaatacatttgatattaaatgaacctaaaaaatagttttttgtttataaatatga 39231926  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 38244157 - 38244218
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 238  Q
    |||||||||||| ||||||| |||||| || |||||| | | | ||||||||||||||||||    
T  38244157 atagatcaaatacattagatgttcaatgaatctaaaaagcactcttttgtttataaatatga 38244218  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 34360838 - 34360912
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 251  Q
    |||||||||||| |||  ||||||||| ||||||||| |||  |||||  |||||||||||| ||||||||||||    
T  34360838 atagatcaaatacattgtatattcaatgaacctaaaaagtacatttttacttataaatatgatcagatggagtat 34360912  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 36447052 - 36446985
Alignment:
Q  184 aaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 251  Q
    |||||||||||||||| ||||||  ||||| || | |||||| |||||||||||| |||||| |||||    
T  36447052 aaatatattagatatttaataaatttaaaaagttgatttttgcttataaatatgatcagatgaagtat 36446985  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 33853892 - 33853814
Alignment:
Q  183 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgtgtattttg 261  Q
    |||||| ||||  |||||||| ||||||||| |||  ||||||||||||||||||| | |||| ||||| ||| |||||    
T  33853892 caaatacattatgtattcaatgaacctaaaaagtacatttttgtttataaatatgaccggatgaagtatctgttttttg 33853814  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 34138768 - 34138824
Alignment:
Q  178 tagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 234  Q
    ||||| |||||||| |  ||||||||||||||||||  | |||||||||||||||||    
T  34138768 tagatgaaatatatcaattattcaataaacctaaaaaattgttttttgtttataaat 34138824  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 5091755 - 5091797
Alignment:
Q  190 attagatattcaataaacctaaaaggtagttttttgtttataa 232  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  5091755 attagttattcaatgaacctaaaaggtagttttttgtttataa 5091797  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 42074203 - 42074262
Alignment:
Q  175 taatagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 234  Q
    ||||||| ||||||||||||  ||||||| |||||||||  |||||||||| ||||||||    
T  42074203 taatagaccaaatatattaggcattcaatgaacctaaaaaatagttttttgcttataaat 42074262  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 11016664 - 11016718
Alignment:
Q  180 gatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 234  Q
    ||||| ||| ||||| |||||||||||||||||| || | |||||||||||||||    
T  11016664 gatcatatacattagttattcaataaacctaaaaagttgatttttgtttataaat 11016718  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 46673906 - 46673860
Alignment:
Q  178 tagatcaaatatattagatattcaataaacctaaaaggtagtttttt 224  Q
    |||| ||||||||||||||||||||| || |||||| ||||||||||    
T  46673906 tagaccaaatatattagatattcaatgaatctaaaaagtagtttttt 46673860  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 25129762 - 25129818
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 234  Q
    |||||||||||||||||||||||||||||| ||||||  | |||||||| ||||||||    
T  25129762 atagatcaaatatattagatattcaataaatctaaaa-tttgttttttgattataaat 25129818  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 32125410 - 32125471
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 238  Q
    ||||| || ||| |||||||||||||| ||||||||| |||| |||||| ||||||||||||    
T  32125410 atagaccacatacattagatattcaatgaacctaaaaagtagatttttgcttataaatatga 32125471  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 47493269 - 47493208
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 238  Q
    ||||| |||||| ||||| ||||||||||| |||||| ||||||||||  ||||||||||||    
T  47493269 atagaccaaatacattaggtattcaataaatctaaaaagtagttttttacttataaatatga 47493208  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 51333494 - 51333452
Alignment:
Q  196 tattcaataaacctaaaaggtagttttttgtttataaatatga 238  Q
    |||||||||||  ||||| ||||||||||||||||||||||||    
T  51333494 tattcaataaatttaaaaagtagttttttgtttataaatatga 51333452  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 33004250 - 33004303
Alignment:
Q  185 aatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 238  Q
    |||| |||||||||||||||||| ||||| || |||||||  ||||||||||||    
T  33004250 aatacattagatattcaataaacttaaaatgttgtttttttcttataaatatga 33004303  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 25233651 - 25233615
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaa 213  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  25233651 atagaccaaatatattagatattcaataaatctaaaa 25233615  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 108261 - 108202
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatat 236  Q
    ||||| ||||||||| | ||||||||| ||||||||| ||| |||||| |||||||||||    
T  108261 atagaccaaatatatcatatattcaatgaacctaaaaagtaattttttatttataaatat 108202  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 11334308 - 11334255
Alignment:
Q  181 atcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 234  Q
    ||||||||||||| |||||||||||| ||||||   |||||||| |||||||||    
T  11334308 atcaaatatattaaatattcaataaatctaaaaaagagttttttatttataaat 11334255  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 30857305 - 30857358
Alignment:
Q  181 atcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 234  Q
    ||||||||||||||  |||||||||| |||||| ||| ||||||| ||||||||    
T  30857305 atcaaatatattaggcattcaataaatctaaaaagtaattttttgcttataaat 30857358  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 4079554 - 4079610
Alignment:
Q  196 tattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatg 252  Q
    |||||||| |||||||||  | ||||||||||||||||||||| | |||| ||||||    
T  4079554 tattcaatgaacctaaaaaattgttttttgtttataaatatgaccggatgaagtatg 4079610  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 16970312 - 16970378
Alignment:
Q  189 tattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgtgt 255  Q
    |||||| |||||||| ||| ||||| ||||||||| |||||||||||||| | |||  |||||||||    
T  16970312 tattagttattcaatgaacttaaaaagtagtttttagtttataaatatgatcggattaagtatgtgt 16970378  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 42927053 - 42926992
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 238  Q
    |||||||||||| ||||| |||||||| || |||| | || | |||||||||||||||||||    
T  42927053 atagatcaaatacattagttattcaatgaatctaagaagttgatttttgtttataaatatga 42926992  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 47877934 - 47877881
Alignment:
Q  183 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatat 236  Q
    |||||||||||  |||||||||||| ||||| |||  |||||||||||||||||    
T  47877934 caaatatattatgtattcaataaacttaaaaagtacatttttgtttataaatat 47877881  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 7055630 - 7055704
Alignment:
Q  177 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 251  Q
    |||||||||||||||||  |||||||| ||||||||| |||  |||||| |||||||| ||| | || |||||||    
T  7055630 atagatcaaatatattatgtattcaatgaacctaaaaagtacatttttgcttataaatgtgatcggagggagtat 7055704  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 26478521 - 26478571
Alignment:
Q  184 aaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 234  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  26478521 aaatacattaggtattcaataaacctaaaaagtagtgttttgcttataaat 26478571  T

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