View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_36 (Length: 251)
Name: NF10625_high_36
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 49686094 - 49686333
Alignment:
| Q |
11 |
cagagaatttagcaaaaagtgagtttcaatttcaaaacaaataaatgatagaaaatcattgtagtccgtgatagacacaaattcacatgacttgtgtagt |
110 |
Q |
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| T |
49686094 |
cagagaatttagcaaaaattgggtttcaatttcaaaacaaataaatgatagaaaatcattgtagtccgtgatagacacaaattcacatgacttgtgtagt |
49686193 |
T |
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| Q |
111 |
aattttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggat |
210 |
Q |
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| T |
49686194 |
aattttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggat |
49686293 |
T |
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| Q |
211 |
ggctctagttcatgcactacatcttttgttctctcatttg |
250 |
Q |
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| T |
49686294 |
ggctctagttcatgcactacatcttttgttctctcatttg |
49686333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 49690421 - 49690554
Alignment:
| Q |
87 |
acaaattcacatgacttgtgtagta---attttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgt |
183 |
Q |
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| T |
49690421 |
acaaatttacaagacttgtgtggtactcattttccaagtcaacta--gcgtgtcaatttgcttcaaagaatatatttatgtcgtgcaaattaa-aagtgt |
49690517 |
T |
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| Q |
184 |
ggaacaaattgtgaaacagaataggatggctctagtt |
220 |
Q |
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| T |
49690518 |
ggaacaaattgtttaacacaattgaatggctttagtt |
49690554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 49690330 - 49690378
Alignment:
| Q |
9 |
agcagagaatttagcaaaaagtgagtttcaatttcaaaacaaataaatg |
57 |
Q |
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| T |
49690330 |
agcagagaatttagcaagaagtggatttcaatttcaaaagaaataaatg |
49690378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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