View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_4 (Length: 446)
Name: NF10625_high_4
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 22 - 442
Target Start/End: Complemental strand, 44449931 - 44449496
Alignment:
| Q |
22 |
ccccatacacgatgataatatatatcattaatttcgagatttggattagttaattttgttttctaaatgatatagtgtaaaaattaaaaactacaattat |
121 |
Q |
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| T |
44449931 |
ccccatacacgatgataatatatatcattaattttgagatttggattagttaattttgttttctaaatgatatagtgtaaaaattaaaaactacaattat |
44449832 |
T |
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| Q |
122 |
ttctaaaagaattatatgacatctcttgttagctttcttaatc--aaatataaatatcaacaacaaaatctgcctcccctacttaatcagttactagtag |
219 |
Q |
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| T |
44449831 |
ttctaaaagaattatatgacatctcttgttagatttcttaatcaaaaatataaataacaacaacaaaatctgcctcccctacttaatcagttactagtag |
44449732 |
T |
|
| Q |
220 |
atactaaatgaaatatgacata-----tagttgtttctgaagtctctcacaaggcacctttaactcaca--------acaaaagacatgcataagcataa |
306 |
Q |
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| T |
44449731 |
atactaaatgaaatatgacatatacagtagttgtttctgaagtctctcacaaggtacctttaactcacaacaaagctacaaaagacatgcataagcataa |
44449632 |
T |
|
| Q |
307 |
ccattagaatagatatacaaatgtgaaagctgcaagttcccaacccaattaaggattggcctaattaatcaatccctatcaattggtaacgtgagactct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44449631 |
ccattagaatagatatacaaatgtgaaagctgcaagttcccaacccaattaaggattggcctaattaatcaatccctatcaattggtaacgtgagactct |
44449532 |
T |
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| Q |
407 |
caaccggcctctatagtgtgggggttcttctctgtc |
442 |
Q |
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|||| |||||||||||||||||||||||||| |||| |
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| T |
44449531 |
caactggcctctatagtgtgggggttcttctatgtc |
44449496 |
T |
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