View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_40 (Length: 247)
Name: NF10625_high_40
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43867883 - 43867669
Alignment:
| Q |
1 |
cacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatctgcatcacctttcatgtctataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867883 |
cacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatctgcatcacctttcatgtctataat |
43867784 |
T |
|
| Q |
101 |
catagaatataactaaactatattgttttatgtcnnnnnnnnnnnnntgattcaattaatggtttgtgtttgttgaaactagacaatgtgatgaaggaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867783 |
catagaatataactaaactatattgttttatgtc------aaaaaaatgattcaattaatggtttgtgtttgttgaaactagacaatgtgatgaaggaga |
43867690 |
T |
|
| Q |
201 |
cacactagtgtcagtaggtac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43867689 |
cacactagtgtcagtaggtac |
43867669 |
T |
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