View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_5 (Length: 412)
Name: NF10625_high_5
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 39974654 - 39975045
Alignment:
| Q |
8 |
gaggaggagcagagataattctagtcataaaactccaacatagataaaattatgcagagagaactgtatagcacataaataaatagaaatggaaggtaat |
107 |
Q |
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| T |
39974654 |
gaggaagagcatagataattctagtcataaaactccaacatagataaaattatgcagagagaactgtatagcacataaataaatagaaatggaaggtaat |
39974753 |
T |
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| Q |
108 |
gttgattagtagaactccataaagacgagtccctgcaaatagcctgttttcttcctaagctactgatagaaaatcgtatagaataaggcagtaagatttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39974754 |
gttgattagtagaactccataaagacgagtccctgcaaatagccagttttcttcctaagctactgatagaaaatcgtatagaataaggcagtaagatttt |
39974853 |
T |
|
| Q |
208 |
actgaacaaattgcattagtgcaaaatttcatataatataacatacaagtttgaccaggtcattgattgctctcaggtgcttga------gcattggaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
39974854 |
actgaacaaattgcattagtgcaaaatttcatataatataacatacaagtttgaccaggtcattgattgctctcaggtgcttgaacattggaattggaat |
39974953 |
T |
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| Q |
302 |
tggaattgtaattatcataccctccagatgatggcgcaggtggattggcttgatacatggctgatgatgccatagagggagcaccattggaa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39974954 |
tggaattgtaattatcataccctccagatgatggcgcaggtggattggcttgatacatggctgatgatgccatagagggagcaccattggaa |
39975045 |
T |
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