View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10625_high_51 (Length: 240)

Name: NF10625_high_51
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10625_high_51
NF10625_high_51
[»] chr8 (1 HSPs)
chr8 (28-224)||(2944308-2944490)
[»] scaffold0028 (1 HSPs)
scaffold0028 (100-131)||(77467-77498)
[»] chr5 (3 HSPs)
chr5 (92-131)||(19506114-19506153)
chr5 (95-128)||(3421323-3421356)
chr5 (93-129)||(39807100-39807136)
[»] chr1 (2 HSPs)
chr1 (99-128)||(3592836-3592865)
chr1 (95-131)||(41069077-41069113)
[»] chr7 (2 HSPs)
chr7 (95-131)||(9669244-9669280)
chr7 (95-131)||(24865056-24865092)
[»] chr4 (3 HSPs)
chr4 (95-131)||(11133202-11133238)
chr4 (95-131)||(13540268-13540304)
chr4 (95-131)||(32125998-32126034)
[»] chr3 (1 HSPs)
chr3 (95-131)||(17517698-17517734)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 2944308 - 2944490
Alignment:
Q  28 taattgtttttgtaatattgtgaaatatttaaacatatttcatggatattatctttcttaaaaatttaaaattatcaacattaatgtaatgtttttatta 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||| |||||||||    
T  2944308 taattgtttttgtaatattgtgaaatatttaaacatatttcatggatattatcttt--------------attatcaacattaatgtaatttttttatta 2944393  T
Q  128 aatannnnnnncttttatatgcaaaatttcgtatcggatttgtacctagaccattagaattacaagtcacttgcaaaggctgaaacaatggaagatc 224  Q
    ||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2944394 aatatttttttcttttatatgcaaaatttcgtatcggatttatacctagaccattagaattacaagtcacttgcgaaggctgaaacaatggaagatc 2944490  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 131
Target Start/End: Original strand, 77467 - 77498
Alignment:
Q  100 tatcaacattaatgtaatgtttttattaaata 131  Q
    ||||||||||||||||||||||||||||||||    
T  77467 tatcaacattaatgtaatgtttttattaaata 77498  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 19506114 - 19506153
Alignment:
Q  92 tttaaaattatcaacattaatgtaatgtttttattaaata 131  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  19506114 tttaaaattatcaacattaatgtagtgtttatattaaata 19506153  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 3421356 - 3421323
Alignment:
Q  95 aaaattatcaacattaatgtaatgtttttattaa 128  Q
    ||||||||||||||||||||||||||| ||||||    
T  3421356 aaaattatcaacattaatgtaatgtttctattaa 3421323  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 39807136 - 39807100
Alignment:
Q  93 ttaaaattatcaacattaatgtaatgtttttattaaa 129  Q
    |||||||||||||||||||  ||||||||||||||||    
T  39807136 ttaaaattatcaacattaacataatgtttttattaaa 39807100  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 3592865 - 3592836
Alignment:
Q  99 ttatcaacattaatgtaatgtttttattaa 128  Q
    ||||||||||||||||||||||||||||||    
T  3592865 ttatcaacattaatgtaatgtttttattaa 3592836  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 41069113 - 41069077
Alignment:
Q  95 aaaattatcaacattaatgtaatgtttttattaaata 131  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  41069113 aaaatcatcaacattaatgtaatgtttgtattaaata 41069077  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 9669244 - 9669280
Alignment:
Q  95 aaaattatcaacattaatgtaatgtttttattaaata 131  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  9669244 aaaattatcaatattaatgtagtgtttttattaaata 9669280  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 24865056 - 24865092
Alignment:
Q  95 aaaattatcaacattaatgtaatgtttttattaaata 131  Q
    ||||||||||  |||||||||||||||||||||||||    
T  24865056 aaaattatcagaattaatgtaatgtttttattaaata 24865092  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 11133238 - 11133202
Alignment:
Q  95 aaaattatcaacattaatgtaatgtttttattaaata 131  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  11133238 aaaattatcaacattaatataatgtttttattgaata 11133202  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 13540268 - 13540304
Alignment:
Q  95 aaaattatcaacattaatgtaatgtttttattaaata 131  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  13540268 aaaattatcaatattaatgtagtgtttttattaaata 13540304  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 32126034 - 32125998
Alignment:
Q  95 aaaattatcaacattaatgtaatgtttttattaaata 131  Q
    |||| |||||| |||||||||||||||||||||||||    
T  32126034 aaaaatatcaatattaatgtaatgtttttattaaata 32125998  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 17517734 - 17517698
Alignment:
Q  95 aaaattatcaacattaatgtaatgtttttattaaata 131  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  17517734 aaaattatcaacattaatgcaatgtttctattaaata 17517698  T

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