View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_52 (Length: 239)
Name: NF10625_high_52
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 30718542 - 30718323
Alignment:
| Q |
20 |
cccttatcacaagtctaatgattttccatattgatgggaaaatgtatgttttggtgttttgttttcaatcagcataattactaccatcaagatcatttga |
119 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30718542 |
cccttatcacaagtctaatgattttccatattgacgggaaaatgtatgttttggtgttttgttttcaatcagcgtaattactaccatcaagatcatttga |
30718443 |
T |
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| Q |
120 |
taatcagaaactttaagttatcaacaggcaaagtgtctgtatatgcacttagcaaagcaccatttgtctgttagaaccaaagataataaattggttgttg |
219 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30718442 |
taatcagaaactttaaggtatcaacaggcaaagtgtctgtatatgcacttagcaaagcaccatttgtctgttagaaccaaagataataaattggttgttg |
30718343 |
T |
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| Q |
220 |
ctttattctcggtgattacc |
239 |
Q |
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|||||||||||||||||||| |
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| T |
30718342 |
ctttattctcggtgattacc |
30718323 |
T |
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