View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_6 (Length: 397)
Name: NF10625_high_6
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 43864550 - 43864184
Alignment:
| Q |
18 |
caattgttgaaagagatccctcaaagaattttcccacctcctgatccatgacaccatgaatttaccccaaaaatattgtaagggttatatttagattgca |
117 |
Q |
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| T |
43864550 |
caattgttgaaagagatccctcaaagaattttcccacctcctgatccatgacaccttgaatttaccccaaaaatattgtaagggttatatttagattgca |
43864451 |
T |
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| Q |
118 |
agaaaccagcaacggccaagagtgaatttggtttggatgcatagtgtaattgtggatcaatatctaaaaattgctnnnnnnntaatttgaaaagaccaac |
217 |
Q |
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| T |
43864450 |
agaaaccagcaacggccaagagtgaatttggtttggatgcatagtgtaattgtggatcaatatctaaaaattgctaaaaaa--aaattgaaaagaccaac |
43864353 |
T |
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| Q |
218 |
ctcatcaactttgattataagttaagagtcttccacatctttacatttgatacaatcacttcattcacgttgatttgacaacaacaaaataaatataatt |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43864352 |
ctcgtcaactttgattataagttaagagtcttccacatctttacatttgatacaatcacttcattcatgttgatttgacaacaacaaaataaatataatt |
43864253 |
T |
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| Q |
318 |
ataagtttatttttgaggcactgacctgctannnnnnngtcaaatcgaca-cgattaaatcatcatttc |
385 |
Q |
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|||| ||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
43864252 |
ataaatttatttttgaggtactgacctgctatttttttgtcaaatcgacaccgattaagtcatcatttc |
43864184 |
T |
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