View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_high_67 (Length: 214)
Name: NF10625_high_67
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 1140356 - 1140251
Alignment:
| Q |
2 |
ggaattgtacagccgtctctgttgctgcagaatccgcacagcagttgtctttgaaacgtcggcctttcacctttaaccataggcgaaaagaaaccgtcca |
101 |
Q |
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| T |
1140356 |
ggaaatgtacaaccatctccgttgctgcagaatccgcacagcagttgtctttgaaacgtcgacctttcacctttaaccataggcgaaaagaaaccgtcca |
1140257 |
T |
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| Q |
102 |
ttaaat |
107 |
Q |
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|||||| |
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| T |
1140256 |
ttaaat |
1140251 |
T |
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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 1139723 - 1139629
Alignment:
| Q |
109 |
ttcttcaattatatacgattaacaatttcaaaactggtatgaatcttcattgtcatttgggattctcttttgaattttaagatcattttattcat |
203 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| |
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| T |
1139723 |
ttcttcaattatatacgattaacaatttcaaaattgatatgaatcttcattgtcatttgagattttcttttgaattttaagattattttattcat |
1139629 |
T |
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