View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10625_low_1 (Length: 552)
Name: NF10625_low_1
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 172 - 535
Target Start/End: Complemental strand, 40121973 - 40121600
Alignment:
| Q |
172 |
atagaagaacagtttacgcgcagcagctgaaaattctaatcaacgtcgcgtacaattctaa-------------aaaatctagctaaggaacagcttcca |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||| |||||||| |||||||||||| |
|
|
| T |
40121973 |
atagaagaacagtttacgcgcagcagctgaaaattctaatcgacgtcccgtacaattcaaatgaatccattctaaaaacctagctaaagaacagcttcca |
40121874 |
T |
|
| Q |
259 |
aacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40121873 |
aacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgt---t |
40121777 |
T |
|
| Q |
359 |
attacctccttttcctcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggaca |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40121776 |
attacctccttttcctcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggaca |
40121677 |
T |
|
| Q |
459 |
cttcaacattgtttctgcttgatagatttttcattggaagagaaggaacaatgttcttagcagtggtatggtctgtg |
535 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40121676 |
cttcaacattgtctctgcttgatagatttttcattggaagagaaggaacaatattcttagcagtggtatggtctgtg |
40121600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 250 - 504
Target Start/End: Complemental strand, 40125534 - 40125283
Alignment:
| Q |
250 |
cagcttccaaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaacta |
349 |
Q |
| |
|
||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
40125534 |
cagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaacta |
40125435 |
T |
|
| Q |
350 |
ggtgtacatattacctccttttcc---tcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcacta |
446 |
Q |
| |
|
|| || ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||| ||| ||| |
|
|
| T |
40125434 |
ggggt---tattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggctcta |
40125341 |
T |
|
| Q |
447 |
atggagaggacacttcaacattgtttctgcttgatagatttttcattggaagagaagg |
504 |
Q |
| |
|
|||||| ||||||||||||| ||| | || ||| | |||||||||||||| ||||| |
|
|
| T |
40125340 |
atggaggggacacttcaacagtgtctttgtttgtgaagtttttcattggaagggaagg |
40125283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 247 - 504
Target Start/End: Complemental strand, 40093065 - 40092811
Alignment:
| Q |
247 |
gaacagcttccaaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaa |
346 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
40093065 |
gaacagcctccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaa |
40092966 |
T |
|
| Q |
347 |
ctaggtgtacatattacctccttttcc---tcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggca |
443 |
Q |
| |
|
||||| || ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||| ||| |
|
|
| T |
40092965 |
ctaggggt---tattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggct |
40092872 |
T |
|
| Q |
444 |
ctaatggagaggacacttcaacattgtttctgcttgatagatttttcattggaagagaagg |
504 |
Q |
| |
|
||||||||| ||||||||||||| ||| | || ||| | |||||||||||||| ||||| |
|
|
| T |
40092871 |
ctaatggaggggacacttcaacactgtctttgtttgtgaagtttttcattggaagggaagg |
40092811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 40122048 - 40121984
Alignment:
| Q |
19 |
ataacagcaatctgcaatatcagttaatgaatgtatagtctttttggcatttggtgaactcaaaa |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40122048 |
ataacagcaatctgcaatatcagttaatgaatgtatagtctttttggcatttggtgaactcaaaa |
40121984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 40093386 - 40093333
Alignment:
| Q |
52 |
tatagtctttttggcatttggtgaactcaaaagaaatgttaaattaaatttgaa |
105 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||| ||| ||||||||||||||||| |
|
|
| T |
40093386 |
tatagtctttatggcatttgatgaaatcaaaataaaagttaaattaaatttgaa |
40093333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University