View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_11 (Length: 392)
Name: NF10625_low_11
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 8005047 - 8004684
Alignment:
| Q |
20 |
ttatcaacgtactcacttttcttcggagaggataatggtcattactatattttgagtataaactatcaacaatcaaagtaattaaccatgtttctagaac |
119 |
Q |
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| T |
8005047 |
ttatcaacgtactcacttttcttcggagaggataatggtcattactatattttgaatataaactatcaacaatcaaagtaattaaccatgtttctagaac |
8004948 |
T |
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| Q |
120 |
ataaaaacaaagctaaaccaagattcccaacatgtaccatgggaccaaaaaagtaaatctggtgaattnnnnnnnn-tactaatcattctgcataagctc |
218 |
Q |
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| T |
8004947 |
ataaaaacaaagctaaaccaagattcccaacatgtaccatgggagcaaaaaagtaaatctggtgaattaaaaaaaaatactaatcattctgcataagctc |
8004848 |
T |
|
| Q |
219 |
catcaaaattgaaaccatcaaaaccacctccattgttagccatacctccattgttacccagatcatcgtccagacctccattgttacccagacagacctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004847 |
catcaaaattgaaaccatcaaaaccacctccattgttagccatacctccattgttacccagatcatcgtccagacctccattgttacccagacagacctc |
8004748 |
T |
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| Q |
319 |
cattgttaaactcagtcatcaaggtaataataagacccagcattcttttgttctctgtcctttg |
382 |
Q |
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| T |
8004747 |
cattgttaaactcagtcatcaaggtaataataagacccagcattcttttgttctctgtcctttg |
8004684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 51519034 - 51518977
Alignment:
| Q |
325 |
taaactcagtcatcaaggtaataataagacccagcattcttttgttctctgtcctttg |
382 |
Q |
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| T |
51519034 |
taaactcagtcatcgaggtaataataagagccagcattcttttgctctctgtcctttg |
51518977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 1300120 - 1300173
Alignment:
| Q |
327 |
aactcagtcatcaaggtaataataagacccagcattcttttgttctctgtcctt |
380 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||| ||||| ||||| |
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| T |
1300120 |
aacttagtcatcaaggtaataataagtcccagcaagcttttgctctctatcctt |
1300173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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