View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10625_low_15 (Length: 361)
Name: NF10625_low_15
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_15 |
 | |
|
| [»] chr2 (6 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 183 - 361
Target Start/End: Complemental strand, 8994189 - 8994011
Alignment:
| Q |
183 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994189 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
8994090 |
T |
|
| Q |
283 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaat |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994089 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaat |
8994011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 183 - 361
Target Start/End: Complemental strand, 9028846 - 9028668
Alignment:
| Q |
183 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028846 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
9028747 |
T |
|
| Q |
283 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaat |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028746 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaat |
9028668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 8994317 - 8994203
Alignment:
| Q |
1 |
agagagaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagtgatcattgcccatggaaacatcagtatctggttttgagaagaac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994317 |
agagagaatccctgatttgttcagagcttccacaaaccacacatgattatcaaagtgatcattacccatggaaacatcagtatctggttttgagaagaat |
8994218 |
T |
|
| Q |
101 |
aggaacaatctgcgt |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8994217 |
aggaacaatctgcgt |
8994203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9028974 - 9028860
Alignment:
| Q |
1 |
agagagaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagtgatcattgcccatggaaacatcagtatctggttttgagaagaac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028974 |
agagagaatccctgatttgttcagagcttccacaaaccacacatgattatcaaagtgatcattacccatggaaacatcagtatctggttttgagaagaat |
9028875 |
T |
|
| Q |
101 |
aggaacaatctgcgt |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9028874 |
aggaacaatctgcgt |
9028860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 9019349 - 9019266
Alignment:
| Q |
278 |
acgaaagttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaat |
361 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9019349 |
acgaaagttggagtaaattggtttgtgaagattattgatgttgaagtaacgtgtatctatcatatcattttgaaaaactgaaat |
9019266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 9019458 - 9019407
Alignment:
| Q |
78 |
cagtatctggttttgagaagaacaggaacaatctgcgtcgagaaggagaagg |
129 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |||||||||| ||||| |
|
|
| T |
9019458 |
cagtatctggttttgagatgaacatgaacaatctgagtcgagaaggggaagg |
9019407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 44884185 - 44884348
Alignment:
| Q |
5 |
agaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagtgatcattgcccatggaaacatcagtatctggttttgagaagaacagga |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| |||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
44884185 |
agaatccctgagttgttgagagcttccacaaaccatgcatgattataaaagtgaccatttcccatggaaacagcagtatctggttttgagaagaagagga |
44884284 |
T |
|
| Q |
105 |
acaatctgcgtcga------gaaggagaagggtttgacgacaaatgatcatactcttttatcat |
162 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||| |||||||||| | |||||| |
|
|
| T |
44884285 |
acaatctgagtcgagaaggtgaaggagaagggtttgaagacaaacgatcatactcatctatcat |
44884348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University