View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10625_low_16 (Length: 359)

Name: NF10625_low_16
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10625_low_16
NF10625_low_16
[»] chr4 (3 HSPs)
chr4 (16-177)||(4117321-4117482)
chr4 (241-313)||(4117531-4117603)
chr4 (309-350)||(4117611-4117654)
[»] chr5 (4 HSPs)
chr5 (16-173)||(21156610-21156767)
chr5 (205-313)||(21156799-21156908)
chr5 (270-314)||(39481161-39481205)
chr5 (309-350)||(21156916-21156959)
[»] chr1 (1 HSPs)
chr1 (252-316)||(47933927-47933991)
[»] chr8 (1 HSPs)
chr8 (220-311)||(30849743-30849834)
[»] scaffold0317 (1 HSPs)
scaffold0317 (254-307)||(19233-19286)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 4117321 - 4117482
Alignment:
Q  16 caaacacaaaaatggtggacaacgatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctacagttgtattcaaacatccac 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4117321 caaacacaaaaatggtggacaacaatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctacagttatattcaaacatccac 4117420  T
Q  116 aatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacga 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117421 aatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacga 4117482  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 4117531 - 4117603
Alignment:
Q  241 ccagcacgtcgctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccacc 313  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117531 ccagcacctcgctctcaaatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccacc 4117603  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 4117611 - 4117654
Alignment:
Q  309 ccaccgtcctcaccctctc--gcctccgtatttgttctctctgc 350  Q
    |||||||||||||||||||  ||||| |||||||||||||||||    
T  4117611 ccaccgtcctcaccctctctcgcctctgtatttgttctctctgc 4117654  T

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Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 21156610 - 21156767
Alignment:
Q  16 caaacacaaaaatggtggacaacgatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctacagttgtattcaaacatccac 115  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21156610 caaacacaaaaatggtggacaacaatgagttataacaagtaatatgatttaaacaaaacacaaagcatagcaggtgctacagttgtattcaaacatccac 21156709  T
Q  116 aatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcactt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21156710 aatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcactt 21156767  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 21156799 - 21156908
Alignment:
Q  205 acttttaacagtacacaaatcacaccaccgccacca-ccagcacgtcgctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgt 303  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21156799 acttttaacagtacacaaatcacaccaccgccaccatccagcacctcgcactcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgt 21156898  T
Q  304 caccaccacc 313  Q
    ||||||||||    
T  21156899 caccaccacc 21156908  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 39481205 - 39481161
Alignment:
Q  270 attaacgtcatctatcaccatatcatctcaccgtcaccaccaccg 314  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  39481205 attaacgtcatctatcaccatctcatctcaccgtcaccaccaccg 39481161  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 21156916 - 21156959
Alignment:
Q  309 ccaccgtcctcaccctctc--gcctccgtatttgttctctctgc 350  Q
    |||||||||||||||||||  ||||| |||||||||||||||||    
T  21156916 ccaccgtcctcaccctctctcgcctctgtatttgttctctctgc 21156959  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 47933991 - 47933927
Alignment:
Q  252 ctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccaccgtc 316  Q
    ||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  47933991 ctctcagatctgaacaccattaacgtcgtctattaccatctcatctcaccgtcaccaccatcgtc 47933927  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 30849743 - 30849834
Alignment:
Q  220 caaatcacaccaccgccaccaccagcacgtcgctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccacca 311  Q
    |||||||||||||||  || ||||  || || |||||||||| |||| |||||||| |||||||| ||||| ||||||||||||||||||||    
T  30849743 caaatcacaccaccgtgactaccacaacctcactctcagatcagaacaccattaacatcatctattaccatctcatctcaccgtcaccacca 30849834  T

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Target: scaffold0317 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 19233 - 19286
Alignment:
Q  254 ctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcacc 307  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19233 ctcaaatctgaacaccattaacgtcatctatcaccatctcatctcaccgtcacc 19286  T

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