View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_18 (Length: 349)
Name: NF10625_low_18
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 16194705 - 16195027
Alignment:
| Q |
11 |
caaaggcatgatcttgacttgatttgtagagctcatcaggttttgtaaattcatttttatgctgttaaatatgtttttagttcttatataatcgtgaaag |
110 |
Q |
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| T |
16194705 |
caaaggcatgatcttgacttgatttgtagagctcatcaggttttgtaaattcgttttcatgctgttaaatatgcttttagttcctatataatcgtgaaag |
16194804 |
T |
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| Q |
111 |
ttcgactttagtaatctctaaatttgagaaaggttttgtttatagcgtagtgcttgtatacttatattttgagtgaagacctagtttagttcccaagaaa |
210 |
Q |
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| T |
16194805 |
ttcgactttagtaatctctaaatttgagaaaggttttgtttatagcgcaatgcttgtatacttatattttgagtgaagacctagtttagttcccaagaaa |
16194904 |
T |
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| Q |
211 |
aactatgagaccatgttgggttcaagtttgactggttagtcgcatgcacatcaattatgaatgagataaatgtttcatatataatagacgtggctcatat |
310 |
Q |
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||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16194905 |
aactacgagaccatgttgggttcaagtttgaccggttagtc----gcacatcaattatgaatgagataaatgtttcatatataacagacgtggctcatat |
16195000 |
T |
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| Q |
311 |
a---ggtgccttatgagctaagatttt |
334 |
Q |
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| |||| |||||||| ||||||||| |
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| T |
16195001 |
acctggtgtcttatgagttaagatttt |
16195027 |
T |
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