View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10625_low_19 (Length: 348)

Name: NF10625_low_19
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10625_low_19
NF10625_low_19
[»] chr7 (10 HSPs)
chr7 (1-330)||(12820026-12820355)
chr7 (29-127)||(19326123-19326221)
chr7 (67-129)||(19344751-19344813)
chr7 (236-328)||(19351408-19351500)
chr7 (236-328)||(19779217-19779309)
chr7 (67-102)||(19374626-19374661)
chr7 (296-330)||(13417351-13417385)
chr7 (296-330)||(15572348-15572382)
chr7 (236-328)||(19888074-19888166)
chr7 (294-330)||(22028268-22028304)
[»] chr6 (2 HSPs)
chr6 (67-127)||(24254602-24254662)
chr6 (245-328)||(14749008-14749091)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 12820026 - 12820355
Alignment:
Q  1 ttaatacagcaagactttgttgaacaactggcacttcatcaacctcacgagggggcaacaagcgcgtgtatgtctcggtactaagatcaagggagataat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  12820026 ttaatacagcaagactttgttgaacaactggcacttcatcaacctcacgagggggcagcaagcgcgtgtatatctcggtactaagatcaagggagataat 12820125  T
Q  101 cataagttgttcaacagtaaaatccttctcactatacttaaaactcttatttggattggaaaaccagtaaacagtgccattcaaatacacaccttcatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12820126 cataagttgttcaacagtaaaatccttctcactatacttaaaactcttattcggattggaaaaccagtaaacagtgccattcaaatacacaccttcatta 12820225  T
Q  201 aacataatgccaagataaataacaacatgaaaactaatatttctccaaacattatcacgtaaactacaaaccttcacctctttggaagaaaaggccacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12820226 aacataatgccaagataaataacaacatgaaaactaatatttctccaaacattatcacgtaaactacaaaccttcacctctttggaagaaaaggccacca 12820325  T
Q  301 ccttgtaagtgtcagttgaattatcataac 330  Q
    ||||||||||||||||||||||||||||||    
T  12820326 ccttgtaagtgtcagttgaattatcataac 12820355  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 19326123 - 19326221
Alignment:
Q  29 tggcacttcatcaacctcacgagggggcaacaagcgcgtgtatgtctcggtactaagatcaagggagataatcataagttgttcaacagtaaaatcctt 127  Q
    |||||||||||||||  ||||||||| |   ||  || |||||||||| |||| ||||||||||||||||||||||| ||| || || |||| ||||||    
T  19326123 tggcacttcatcaacaccacgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataatcataaattgctcgacggtaatatcctt 19326221  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 19344751 - 19344813
Alignment:
Q  67 tgtatgtctcggtactaagatcaagggagataatcataagttgttcaacagtaaaatccttct 129  Q
    ||||||||||||||| |||||||||||||||||||| || ||   ||||||||| ||||||||    
T  19344751 tgtatgtctcggtaccaagatcaagggagataatcacaaatttcccaacagtaatatccttct 19344813  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 328
Target Start/End: Original strand, 19351408 - 19351500
Alignment:
Q  236 aatatttctccaaacattatcacgtaaactacaaaccttcacctctttggaagaaaaggccaccaccttgtaagtgtcagttgaattatcata 328  Q
    ||||| |||||||||||||||||  |||||| |||| |||||||| |||| |    ||| ||||||||| ||||||||| ||||| |||||||    
T  19351408 aatatctctccaaacattatcactcaaactaaaaactttcacctcattggcattgtaggacaccaccttataagtgtcatttgaaatatcata 19351500  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 19779309 - 19779217
Alignment:
Q  236 aatatttctccaaacattatcacgtaaactacaaaccttcacctctttggaagaaaaggccaccaccttgtaagtgtcagttgaattatcata 328  Q
    ||||| |||||||| ||||||||  |||||  |||  || ||||| | || |||||||||||||||||| ||||||||| ||||| |||||||    
T  19779309 aatatctctccaaatattatcactcaaactgaaaattttgacctcgtcggcagaaaaggccaccaccttataagtgtcatttgaaatatcata 19779217  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 19374661 - 19374626
Alignment:
Q  67 tgtatgtctcggtactaagatcaagggagataatca 102  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19374661 tgtatgtctcggtaccaagatcaagggagataatca 19374626  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 13417351 - 13417385
Alignment:
Q  296 caccaccttgtaagtgtcagttgaattatcataac 330  Q
    |||||||||||||||||| ||||||||||||||||    
T  13417351 caccaccttgtaagtgtccgttgaattatcataac 13417385  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 15572348 - 15572382
Alignment:
Q  296 caccaccttgtaagtgtcagttgaattatcataac 330  Q
    |||||||||||||||||| ||||||||||||||||    
T  15572348 caccaccttgtaagtgtcggttgaattatcataac 15572382  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 328
Target Start/End: Original strand, 19888074 - 19888166
Alignment:
Q  236 aatatttctccaaacattatcacgtaaactacaaaccttcacctctttggaagaaaaggccaccaccttgtaagtgtcagttgaattatcata 328  Q
    ||||| |||||||| ||||||||  |||||| |||  || ||||| |  | |||||| ||||||||||| ||||||||| ||||| |||||||    
T  19888074 aatatctctccaaatattatcactcaaactaaaaagtttgacctcgtctgcagaaaaagccaccaccttataagtgtcatttgaaatatcata 19888166  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 22028304 - 22028268
Alignment:
Q  294 gccaccaccttgtaagtgtcagttgaattatcataac 330  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  22028304 gccactaccttgtaagtatcagttgaattatcataac 22028268  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 24254602 - 24254662
Alignment:
Q  67 tgtatgtctcggtactaagatcaagggagataatcataagttgttcaacagtaaaatcctt 127  Q
    |||||||||| |||| ||||||||||||||||||||| | ||| ||||| |||| ||||||    
T  24254602 tgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatcctt 24254662  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 14749091 - 14749008
Alignment:
Q  245 ccaaacattatcacgtaaactacaaaccttcacctctttggaagaaaaggccaccaccttgtaagtgtcagttgaattatcata 328  Q
    |||||||||||||| ||||||  |||| || ||||| | |  |||||||||||||||||| ||||||||  ||||| |||||||    
T  14749091 ccaaacattatcacttaaactgaaaactttgacctcatcgatagaaaaggccaccaccttataagtgtcgtttgaaatatcata 14749008  T

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