View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_20 (Length: 338)
Name: NF10625_low_20
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 23040118 - 23040317
Alignment:
| Q |
20 |
agtggcacgaagcacatatacttattagtataattattaatgcaaagaccatattgg---gttgacattgaaattaaaattgacttgctaggcatatcaa |
116 |
Q |
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| T |
23040118 |
agtggcaagaagcacatatacttattagtataatta---atgcaaagaccatattggccggttgacattgaaattaaaattgacttgctaggcatatcaa |
23040214 |
T |
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| Q |
117 |
ttttatggttttagttgttgatcattgactgtaacaataataaagtagtttctgatcacattaacatatcggtttaatgccgctatatatggccatgatt |
216 |
Q |
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| T |
23040215 |
ttttatggttttagttgttgatcattgactgtaacaataataaagaagtttctgatcacattaacatatcggtttaatgccactatatatggccatgatt |
23040314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 23040333 - 23040382
Alignment:
| Q |
251 |
ttcaactataggacttcaataccacaaacgttggagttttctaaactcta |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23040333 |
ttcaactataggacttcaataccacaaactttggagttttctaaactcta |
23040382 |
T |
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