View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_23 (Length: 335)
Name: NF10625_low_23
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 10119013 - 10118708
Alignment:
| Q |
17 |
caactaccacccatttcagattgcttgcggagttctttttgaagttggaacaactgataagcacctaaatcatatgtgcacattataatcaaacattgtt |
116 |
Q |
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| T |
10119013 |
caactaccacccgtttcagattgcttgcggagttctttttgaagttggaacaactgataagcacctaaatcatatgtgcacattataatcaaacattgtt |
10118914 |
T |
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| Q |
117 |
ctgactaactaacttccaataagaagaaactgacattaagggaagggttgctaatggagatgtctgtcattatacctttagcagctgtaaactgtgattt |
216 |
Q |
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| T |
10118913 |
ctgactaactaacttccaataagaagaaactgacattaagggaagggttgctaatggagatgtctgtcattatacctttagcagctgtaaactgtgattt |
10118814 |
T |
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| Q |
217 |
ccaataatgtcccttactgcaaacccattctgccagaaatagcactcccagataaagggcatttttccctagttcttgtgctgcttggtttgaatatata |
316 |
Q |
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| T |
10118813 |
ccaataatgtcccttactgcaaacccattctgccagaaatggcactcccagataaagggcatttttccctagttcttgtgctgcttggtttgaatatata |
10118714 |
T |
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| Q |
317 |
tagcct |
322 |
Q |
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|||||| |
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| T |
10118713 |
tagcct |
10118708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 36 - 321
Target Start/End: Complemental strand, 10125592 - 10125306
Alignment:
| Q |
36 |
attgcttgcggagttctttttgaagttggaacaactgataagcacctaaatcatatgtgcacattataatcaaacattgttctgactaactaacttccaa |
135 |
Q |
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| T |
10125592 |
attgcttgctgagttcttcttgaagttggagcaactgaaaagcacctaaatcatatgtggacaatataatcatacatttttctgaataactaactttcaa |
10125493 |
T |
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| Q |
136 |
taagaagaaactgacatta-agggaagggttgctaatggagatgtctgtcattatacctttagcagctgtaaactgtgatttccaataatgtcccttact |
234 |
Q |
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|||||| |||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| | |
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| T |
10125492 |
gaagaagcaactgatattttagggaaggcttgctaatgaagatgtctgtcattatacctttagcagctgttaactgtgatttccaaaaatgtcctttatt |
10125393 |
T |
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| Q |
235 |
gcaaacccattctgccagaaatagcactcccagataaagggcatttttccctagttcttgtgctgcttggtttgaatatatatagcc |
321 |
Q |
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| T |
10125392 |
acgaacccattcggccagaaatggaactccaagataaagggcctttttccctagttcttgtgctgcttgtcttgagtatatatagcc |
10125306 |
T |
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