View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10625_low_25 (Length: 331)

Name: NF10625_low_25
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10625_low_25
NF10625_low_25
[»] chr2 (13 HSPs)
chr2 (98-324)||(17244516-17244743)
chr2 (19-101)||(17245114-17245196)
chr2 (55-101)||(22963398-22963444)
chr2 (55-101)||(22998033-22998079)
chr2 (55-97)||(19313850-19313892)
chr2 (55-97)||(33902066-33902108)
chr2 (56-97)||(41465508-41465549)
chr2 (57-101)||(4264236-4264280)
chr2 (58-97)||(13711465-13711504)
chr2 (59-97)||(36641988-36642026)
chr2 (57-94)||(39788588-39788625)
chr2 (57-97)||(11366544-11366584)
chr2 (57-101)||(34441925-34441969)
[»] chr4 (17 HSPs)
chr4 (232-323)||(52451917-52452008)
chr4 (54-97)||(28003157-28003200)
chr4 (57-97)||(17272011-17272051)
chr4 (57-97)||(29584369-29584409)
chr4 (57-97)||(32912751-32912791)
chr4 (57-97)||(34361662-34361702)
chr4 (57-97)||(38812268-38812308)
chr4 (57-92)||(37663915-37663950)
chr4 (58-97)||(51204580-51204619)
chr4 (55-94)||(55241278-55241317)
chr4 (59-97)||(20097499-20097537)
chr4 (59-97)||(27396618-27396656)
chr4 (55-97)||(38811811-38811853)
chr4 (55-97)||(39397916-39397958)
chr4 (57-101)||(7152273-7152317)
chr4 (57-97)||(35021206-35021246)
chr4 (57-97)||(38011854-38011894)
[»] chr6 (9 HSPs)
chr6 (57-97)||(19631749-19631789)
chr6 (57-97)||(8513233-8513273)
chr6 (58-97)||(20768087-20768126)
chr6 (59-97)||(30353502-30353540)
chr6 (60-97)||(25440961-25440998)
chr6 (57-97)||(3880083-3880123)
chr6 (57-97)||(4318967-4319007)
chr6 (57-97)||(5627391-5627431)
chr6 (57-101)||(11084156-11084200)
[»] chr7 (13 HSPs)
chr7 (54-100)||(10359357-10359403)
chr7 (54-94)||(5657630-5657670)
chr7 (57-97)||(26524473-26524513)
chr7 (55-94)||(8861258-8861297)
chr7 (58-97)||(24211717-24211756)
chr7 (57-92)||(30055501-30055536)
chr7 (56-94)||(6546493-6546531)
chr7 (55-97)||(23402379-23402421)
chr7 (56-97)||(12165726-12165767)
chr7 (56-97)||(37109846-37109887)
chr7 (57-97)||(17842732-17842772)
chr7 (57-97)||(18797304-18797344)
chr7 (57-101)||(41765220-41765264)
[»] chr5 (9 HSPs)
chr5 (59-101)||(25501057-25501099)
chr5 (57-97)||(8742022-8742062)
chr5 (57-97)||(27330306-27330346)
chr5 (55-97)||(14409461-14409503)
chr5 (56-97)||(7693229-7693270)
chr5 (57-94)||(39572819-39572856)
chr5 (57-97)||(19119859-19119899)
chr5 (57-97)||(22616494-22616534)
chr5 (57-97)||(25513771-25513811)
[»] chr1 (8 HSPs)
chr1 (55-101)||(3309142-3309188)
chr1 (56-97)||(38823209-38823250)
chr1 (57-97)||(1547283-1547323)
chr1 (56-94)||(43579241-43579279)
chr1 (57-97)||(4150495-4150535)
chr1 (57-97)||(16415641-16415681)
chr1 (57-97)||(18422647-18422687)
chr1 (57-97)||(37619036-37619076)
[»] chr8 (10 HSPs)
chr8 (56-97)||(15009240-15009281)
chr8 (57-97)||(1150256-1150296)
chr8 (57-97)||(7998362-7998402)
chr8 (57-95)||(39099262-39099300)
chr8 (56-97)||(13307621-13307662)
chr8 (57-97)||(1835397-1835437)
chr8 (57-97)||(1879238-1879278)
chr8 (56-92)||(5300102-5300138)
chr8 (57-101)||(16447022-16447066)
chr8 (57-97)||(27082989-27083029)
[»] chr3 (12 HSPs)
chr3 (55-95)||(4015449-4015489)
chr3 (57-97)||(40640642-40640682)
chr3 (55-95)||(42204340-42204380)
chr3 (57-101)||(45879502-45879546)
chr3 (57-95)||(11466815-11466853)
chr3 (56-97)||(51213126-51213167)
chr3 (57-97)||(21193597-21193637)
chr3 (57-97)||(22450959-22450999)
chr3 (57-97)||(26941405-26941445)
chr3 (57-97)||(35844317-35844357)
chr3 (57-97)||(46994795-46994835)
chr3 (55-95)||(53811986-53812026)
[»] scaffold0061 (1 HSPs)
scaffold0061 (59-97)||(43959-43997)
[»] scaffold0017 (1 HSPs)
scaffold0017 (59-97)||(154790-154828)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 98 - 324
Target Start/End: Complemental strand, 17244743 - 17244516
Alignment:
Q  98 aaaggttattattgaaccgcaactttgataaggaattcatgtcacggagnnnnnnnn-ctttctcaattgattattgatagttttaaacatacatatgtg 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||    
T  17244743 aaaggttattattgaaccgcaactttcataaggaattcatgtcacggagattttttttctttcacaattgattattgatagttttaaacatacatatgtg 17244644  T
Q  197 tgaatgaaaaagagatgataatacttgccctagttggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaac 296  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17244643 tgaacgaaaaagagatgataatacttgccctagttggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaac 17244544  T
Q  297 ggcataaaacacctctgagttcttctct 324  Q
    ||||||||| ||||||||||||||||||    
T  17244543 ggcataaaatacctctgagttcttctct 17244516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 17245196 - 17245114
Alignment:
Q  19 aacaatcaaacaaagatacgttgagcttatttatggatggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  17245196 aacaatcaaacaaagatctgttgagcttatttatggatggaaaattctatggtgaagtcgcgagaatgacttttctggtaaag 17245114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 22963398 - 22963444
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  22963398 atggaaaattttatggtgaagtcataagaatgacttttctggtaaag 22963444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 22998079 - 22998033
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  22998079 atggaaaattttatggtgaagtcataagaatgacttttctggtaaag 22998033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 19313850 - 19313892
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  19313850 atggaaaattctatggtgaagtcattagaatgacttttctggt 19313892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 33902066 - 33902108
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  33902066 atggaaaattctatgatgaagtcgttagaatgacttttctggt 33902108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 41465508 - 41465549
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  41465508 tggaaaattctatggtgaagtcatgagaatgacttttctggt 41465549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 4264280 - 4264236
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||||||||||||||| | | |||||||||||||||||||    
T  4264280 ggaaaattctatggtgaagtcatcataatgacttttctggtaaag 4264236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 13711465 - 13711504
Alignment:
Q  58 gaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  13711465 gaaaattctatggtgaagtcatcagaatgacttttctggt 13711504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 36641988 - 36642026
Alignment:
Q  59 aaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  36641988 aaaattctatggtgaagtcatgagaatgacttttctggt 36642026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 39788625 - 39788588
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttct 94  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  39788625 ggaaaattttatggtgaagtcataagaatgacttttct 39788588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 11366584 - 11366544
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  11366584 ggaaaattctatggtgaaatcataagaatgacttttttggt 11366544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 34441969 - 34441925
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||||||||||||||| | | |||||||||| ||||||||    
T  34441969 ggaaaattctatggtgaagtcatgaaaatgacttttttggtaaag 34441925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 323
Target Start/End: Original strand, 52451917 - 52452008
Alignment:
Q  232 ggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaacggcataaaacacctctgagttcttctc 323  Q
    |||||||||||||||  ||||||||||| |||||| |  |||||||| ||||| ||||||||||| |||||||| |  ||||||||||||||    
T  52451917 ggtgcaggtccaagagctattcttgctcgggttataatcccaaattggcctagacctccaagaaccgcataaaataattctgagttcttctc 52452008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 28003200 - 28003157
Alignment:
Q  54 gatggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  28003200 gatggaaaattctatggtgaagtcatgagaatgacttttctggt 28003157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 17272011 - 17272051
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  17272011 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 17272051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 29584409 - 29584369
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  29584409 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 29584369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 32912791 - 32912751
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  32912791 ggaaaattctatggtgaagtcataagaatgacttttttggt 32912751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 34361702 - 34361662
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  34361702 ggaaaattctatggtgaagtcataagaatgacttttttggt 34361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 38812308 - 38812268
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  38812308 ggaaaattctatggtgaagtcatgagaatgacttttctggt 38812268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 37663950 - 37663915
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgactttt 92  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37663950 ggaaaattctatggtgaagtcataagaatgactttt 37663915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 51204580 - 51204619
Alignment:
Q  58 gaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  51204580 gaaaattctatggtgaagtcataaaaatgacttttctggt 51204619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 55241317 - 55241278
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttct 94  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  55241317 atggaaaattctatggtgaagtcatgagaatgacttttct 55241278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 20097537 - 20097499
Alignment:
Q  59 aaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  20097537 aaaattctatggtgaagtcatgagaatgacttttctggt 20097499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 27396618 - 27396656
Alignment:
Q  59 aaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  27396618 aaaattctatggtgaagtcatgagaatgacttttctggt 27396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 38811811 - 38811853
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  38811811 atggaaaattctatggtgaagtcatgagaatgatttttctggt 38811853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 39397916 - 39397958
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||||| | |||||||||||| ||||    
T  39397916 atggaaaattctatggtgaagtcattagaatgacttttatggt 39397958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 7152317 - 7152273
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||||||||||||||| |   |||||||||||||||||||    
T  7152317 ggaaaattctatggtgaagtcatgctaatgacttttctggtaaag 7152273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 35021246 - 35021206
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  35021246 ggaaaattctatggtgaagtcatgaaaatgacttttctggt 35021206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 38011854 - 38011894
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||| || | |||||||||||||||||    
T  38011854 ggaaaattctatggtgaaatcatgagaatgacttttctggt 38011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 19631749 - 19631789
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  19631749 ggaaaattctatggtgaagtcataagaatgacttttctggt 19631789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 8513233 - 8513273
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  8513233 ggaaaattctatggtgaagtcatgagaatgacttttctggt 8513273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 20768087 - 20768126
Alignment:
Q  58 gaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  20768087 gaaaattctatggtgaagtcatgagaatgacttttctggt 20768126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 30353540 - 30353502
Alignment:
Q  59 aaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  30353540 aaaattctatggtgaagtcatgagaatgacttttctggt 30353502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 25440961 - 25440998
Alignment:
Q  60 aaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||| | |||||||||||||||    
T  25440961 aaattctatggtgaagtcgttaaaatgacttttctggt 25440998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 3880123 - 3880083
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  3880123 ggaaaattctatggtgaagtcacgagaatgacttttctggt 3880083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 4319007 - 4318967
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  4319007 ggaaaattctatggtgaagtcatgagaatgacttttttggt 4318967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 5627391 - 5627431
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||| ||||||||| |||||||||||||| ||||    
T  5627391 ggaaaattctaaggtgaagtcataagaatgacttttttggt 5627431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 11084200 - 11084156
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||||||||||||||| | | ||| |||||||||||||||    
T  11084200 ggaaaattctatggtgaagtcatgaaaataacttttctggtaaag 11084156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 10359403 - 10359357
Alignment:
Q  54 gatggaaaattctatggtgaagtcgtaagaatgacttttctggtaaa 100  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||    
T  10359403 gatggaaaattctatggtgaagtcatgataatgacttttctggtaaa 10359357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 5657670 - 5657630
Alignment:
Q  54 gatggaaaattctatggtgaagtcgtaagaatgacttttct 94  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  5657670 gatggaaaattctatggtgaagtcatgagaatgacttttct 5657630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 26524513 - 26524473
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  26524513 ggaaaattctatggtgaagtcatgagaatgacttttctggt 26524473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 8861258 - 8861297
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttct 94  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  8861258 atggaaaattctatggtgaagtcatgagaatgacttttct 8861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 24211717 - 24211756
Alignment:
Q  58 gaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24211717 gaaaattctatggtgaagtcataagaatgacttttttggt 24211756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 30055501 - 30055536
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgactttt 92  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30055501 ggaaaattctatggtgaagtcataagaatgactttt 30055536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 6546493 - 6546531
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttct 94  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  6546493 tggaaaattctatggtgaagtcataagaatgatttttct 6546531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 23402421 - 23402379
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||| |||||| | |||||||||||||||||    
T  23402421 atggaaaattctatggcgaagtcatgagaatgacttttctggt 23402379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 12165726 - 12165767
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||| ||||||||||| | |||||||||||||||    
T  12165726 tggaaaattctacggtgaagtcgttaaaatgacttttctggt 12165767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 37109846 - 37109887
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||| ||| |||||||||| ||||    
T  37109846 tggaaaattctatggtgaagtcataaaaatgacttttttggt 37109887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 17842772 - 17842732
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| ||| |||||||||| ||||    
T  17842772 ggaaaattctatggtgaagtcataaaaatgacttttttggt 17842732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 18797304 - 18797344
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  18797304 ggaaaattctatggtgaagtcatgagaatgacttttttggt 18797344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 41765264 - 41765220
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||| ||||||||||| | ||||||||||||||| |||||    
T  41765264 ggaaaattccatggtgaagtcatgagaatgacttttctgataaag 41765220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 25501099 - 25501057
Alignment:
Q  59 aaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  25501099 aaaattctatggtgaagtcatgagaatgacttttctggtaaag 25501057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 8742062 - 8742022
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  8742062 ggaaaattctatggtgaagtcatgagaatgacttttctggt 8742022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 27330306 - 27330346
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  27330306 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 27330346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 14409503 - 14409461
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  14409503 atggaaaattctatggtgaagtcatgagaatgatttttctggt 14409461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 7693229 - 7693270
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  7693229 tggaaaattctatggtgaagtcattaaaatgacttttctggt 7693270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 39572819 - 39572856
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttct 94  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  39572819 ggaaaattctatggtgaagtcatgagaatgacttttct 39572856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 19119859 - 19119899
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  19119859 ggaaaattctatggtgaagtcatgagaatgacttttgtggt 19119899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 22616494 - 22616534
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  22616494 ggaaaattctatggtgaagtcatgaaaatgacttttctggt 22616534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 25513771 - 25513811
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  25513771 ggaaaattctatggtgaagtcgttaaaatgatttttctggt 25513811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 3309142 - 3309188
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  3309142 atggaaaattctatggtaaagtcatgagaatgacttttctggtaaag 3309188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 38823209 - 38823250
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  38823209 tggaaaattctatggtgaagtcatgagaatgacttttctggt 38823250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 1547283 - 1547323
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  1547283 ggaaaattctatggtgaagtcatgagaatgacttttctggt 1547323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 43579241 - 43579279
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttct 94  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  43579241 tggaaaattctatggtgaagtcatgagaatgacttttct 43579279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 4150535 - 4150495
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  4150535 ggaaaattctatggtgaagtcatgataatgacttttctggt 4150495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 16415641 - 16415681
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||| ||||||||| | |||||||||||||||||    
T  16415641 ggaaaattctaaggtgaagtcatgagaatgacttttctggt 16415681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 18422647 - 18422687
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| ||| |||||||||| ||||    
T  18422647 ggaaaattctatggtgaagtcataaaaatgacttttttggt 18422687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 37619076 - 37619036
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||  |||||||||||||| ||||    
T  37619076 ggaaaattctatggtgaagttataagaatgacttttttggt 37619036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 15009240 - 15009281
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  15009240 tggaaaattctatggtgaagtcataagaatgacttttttggt 15009281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 1150296 - 1150256
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  1150296 ggaaaattctatggtgaagtcataagaatgacttttttggt 1150256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 7998362 - 7998402
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  7998362 ggaaaattctatggtgaagtcatgagaatgacttttctggt 7998402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 39099300 - 39099262
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctg 95  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  39099300 ggaaaattctatggtgaagtcatgagaatgacttttctg 39099262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 13307621 - 13307662
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||| | ||||||| |||||||||    
T  13307621 tggaaaattctatggtgaagtcatgagaatgatttttctggt 13307662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 1835437 - 1835397
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||| || |||||||||||| ||||    
T  1835437 ggaaaattctatggtgaagttgttagaatgacttttttggt 1835397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 1879278 - 1879238
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||| || |||||||||||| ||||    
T  1879278 ggaaaattctatggtgaagttgttagaatgacttttttggt 1879238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 5300138 - 5300102
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgactttt 92  Q
    |||||||||||||||||||||| | ||||||||||||    
T  5300138 tggaaaattctatggtgaagtcatgagaatgactttt 5300102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 16447066 - 16447022
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||||||||||||||| | | ||||||||||||| |||||    
T  16447066 ggaaaattctatggtgaagtcatgaaaatgacttttctgataaag 16447022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 27083029 - 27082989
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | ||| |||||||||||||    
T  27083029 ggaaaattctatggtgaagtcatcagactgacttttctggt 27082989  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 4015449 - 4015489
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctg 95  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  4015449 atggaaaattctatggtgaagtcatgagaatgacttttctg 4015489  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 40640682 - 40640642
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  40640682 ggaaaattctatggtgaagtcatgagaatgacttttctggt 40640642  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 42204340 - 42204380
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctg 95  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  42204340 atggaaaattctatcgtgaagtcgtgagaatgacttttctg 42204380  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 45879546 - 45879502
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 101  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||    
T  45879546 ggaaaattctatgctgaagtcatgagaatgacttttctggtaaag 45879502  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 11466815 - 11466853
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctg 95  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  11466815 ggaaaattctatggtgaagtcttgagaatgacttttctg 11466853  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 51213167 - 51213126
Alignment:
Q  56 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||| | |||||||||||| ||||    
T  51213167 tggaaaattctatggtgaagtcatgagaatgacttttttggt 51213126  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 21193597 - 21193637
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  21193597 ggaaaattctatggtaaagtcatgagaatgacttttctggt 21193637  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 22450959 - 22450999
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | ||||||| |||||||||    
T  22450959 ggaaaattctatggtgaagtcatgagaatgatttttctggt 22450999  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 26941445 - 26941405
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  26941445 ggaaaattctatggtgaagtcataagaatgatttttttggt 26941405  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 35844317 - 35844357
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  35844317 ggaaaattctatggtgaagtcatgataatgacttttctggt 35844357  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 46994835 - 46994795
Alignment:
Q  57 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    ||||||||||| ||||||||||||||||||| |||| ||||    
T  46994835 ggaaaattctacggtgaagtcgtaagaatgatttttttggt 46994795  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 53812026 - 53811986
Alignment:
Q  55 atggaaaattctatggtgaagtcgtaagaatgacttttctg 95  Q
    ||||||||||||| ||||||||| | |||||||||||||||    
T  53812026 atggaaaattctacggtgaagtcatgagaatgacttttctg 53811986  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 43959 - 43997
Alignment:
Q  59 aaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  43959 aaaattctatggtgaagtcgtaagaaagacttttttggt 43997  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 154828 - 154790
Alignment:
Q  59 aaaattctatggtgaagtcgtaagaatgacttttctggt 97  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  154828 aaaattctatggtgaagtcgtaagaaagacttttttggt 154790  T

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