View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_26 (Length: 316)
Name: NF10625_low_26
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 2830114 - 2830221
Alignment:
| Q |
140 |
aaagtttaagcaacataaaagtgtgaagaatcgagtttacgtgagaaaaaggaatcgaaagaggaccatggtttttggatcgaacaggctgcagaagaaa |
239 |
Q |
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| T |
2830114 |
aaagtttaagcaacataaaagtgtgaagaatcgagtttatgtgagaaaaaggaatcgaaagaggaccatggtttttggatcgaacaggctgcagaagaaa |
2830213 |
T |
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| Q |
240 |
ataaggga |
247 |
Q |
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|||||||| |
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| T |
2830214 |
ataaggga |
2830221 |
T |
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Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 2827891 - 2828015
Alignment:
| Q |
16 |
taatcttcatagaacaaagtactatgtaaatctttgtaataatgtnnnnnnnn-gagtgtgaaactttttaaaataaacataacgtagaattctaatagt |
114 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2827891 |
taatctttatagaacaaggtactatgtaaatctttgtaataatgtaaaaaaagagagtgtgaaactttttaaaataaacataacgtagaattctaatagt |
2827990 |
T |
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| Q |
115 |
agtaaacataatgcaaataaacata |
139 |
Q |
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|||||||||||| |||||||||||| |
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| T |
2827991 |
agtaaacataattcaaataaacata |
2828015 |
T |
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