View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_27 (Length: 313)
Name: NF10625_low_27
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 49158944 - 49158661
Alignment:
| Q |
19 |
agaacgaacccgagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaacgcaatattgttcatgact |
118 |
Q |
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| T |
49158944 |
agaacgaacccgagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaacacaatattgttcatgact |
49158845 |
T |
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| Q |
119 |
cacattctatttacgtttatcaaagttcttaactatggttgttttatggattcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccc |
218 |
Q |
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| T |
49158844 |
cacattctatttacatttatcaaagttcttaactatggttgttttatggattcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccc |
49158745 |
T |
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| Q |
219 |
cctggtgctcgtgcccgcgttggtcttacaggattgactgttgctgaacatttccgtgatgctgaaggacaagatgtgcttctt |
302 |
Q |
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| T |
49158744 |
cctggtgctcgtgcccgcgttggtcttacaggattgactgttgctgaacatttccgtgatgctgaaggacaagatgtgcttctt |
49158661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 49154728 - 49154597
Alignment:
| Q |
171 |
cagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgtgcccgcgttggtcttacaggattgactgttgctgaacatt |
270 |
Q |
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| T |
49154728 |
cagagtgagagcaaatgtgctcttgtctacggtcaaatgaatgagccccctggtgctcgtgcccgtgtcggtcttactggacttactgttgctgagcatt |
49154629 |
T |
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| Q |
271 |
tccgtgatgctgaaggacaagatgtgcttctt |
302 |
Q |
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| T |
49154628 |
tccgtgatgctgaaggacaagatgtgcttctt |
49154597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 49154896 - 49154815
Alignment:
| Q |
19 |
agaacgaacccgagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaac |
100 |
Q |
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| T |
49154896 |
agaaagaacccgagagggtaatgacttgtacagagaaatgattgagagtggtgtcattaagctgggtgaaaagcaggtgaac |
49154815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 27960289 - 27960350
Alignment:
| Q |
169 |
ttcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgt |
230 |
Q |
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| T |
27960289 |
ttcagagtcaaagcaaatgtgcgtttgtgtgtggtcaaataaatgacccccctggtgctcgt |
27960350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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