View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_29 (Length: 299)
Name: NF10625_low_29
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 36453378 - 36453093
Alignment:
| Q |
1 |
actagtgttaaagaatgtagttttgttacgtattctttctttttccttttcatcaacactaataaaattacttcaagccaacctttccaaatgcacaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
36453378 |
actagtgttaaagaatgtagttttgttacgtattctttatttttccttttcatcaacgctaatgaaattacttaaagccaacctttccaaatgcacaacc |
36453279 |
T |
|
| Q |
101 |
acgataaaactaacatctttcataaattgaaaacgagttgttaaagtcaaatggtacgtaattttcacaaaatagtaacggcagagtttttctcaaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
36453278 |
acgataaaactaacatctttcataaattgaaaacgagttgttaaagtcaaatggtacgcaattttcacaaaatagtaacgacagagtttttctcaaaa-a |
36453180 |
T |
|
| Q |
201 |
ttgaga-----aaaattagttaatcatactatatataaagtcttgagaatactatatcattatctatttcttaaggtctctcattta |
282 |
Q |
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||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36453179 |
gtgagatcaattaaattaattaatcatactatatattaagtcttgagaatactatatcattatctatttcttaaggtctctcattta |
36453093 |
T |
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