View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_3 (Length: 508)
Name: NF10625_low_3
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 52708501 - 52708260
Alignment:
| Q |
18 |
gatgaatgaattagtggaagtaattaattaagaaagaaagaaa----ccttgagcatgtccaggaaggaggtaagaagcatcgccatcaacaatgatgca |
113 |
Q |
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| T |
52708501 |
gatgaatgaattggtggaagtaattaattaagaaagaaagaaagaaaccttgagcatgtccaggaaggaggtaagaagcatcgccatcaacgatgatgca |
52708402 |
T |
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| Q |
114 |
tctggctctttgcaaatcttcatctaactgcgatgcgatgagatgcgatagtaat-aataaataaacggatccaatccattaaagaaattgaaattgaaa |
212 |
Q |
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| T |
52708401 |
tctggctctttgcaaatcttcatctaactgcgatgcgat-ag------taataataaataaataaacggatccaatacattaaagaaattgaaattga-- |
52708311 |
T |
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| Q |
213 |
atggacaattgaagttcctggtaccttatcagctaaggatggttgaatgagtttatt |
269 |
Q |
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| T |
52708310 |
------aattgaagttcctggtaccttatcagctaaggatggttgaatgagtttatt |
52708260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 52708200 - 52708102
Alignment:
| Q |
329 |
cacgctgacgaagtggttgttcatcgcttaatgtttttgagatgtgaacggaaactgaatcctgaatctctttagcttcttctaatacgcttactactg |
427 |
Q |
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| T |
52708200 |
cacgctgacgaagtggttgttcatcgcttaatgtttttgagatgtgaacggaaactgaatcctgaatctctttagcttcttctaatacgcttactactg |
52708102 |
T |
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