View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10625_low_30 (Length: 293)

Name: NF10625_low_30
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10625_low_30
NF10625_low_30
[»] chr2 (5 HSPs)
chr2 (17-164)||(45338513-45338660)
chr2 (17-163)||(45336202-45336348)
chr2 (18-115)||(14662318-14662418)
chr2 (51-162)||(17648811-17648923)
chr2 (167-195)||(32749574-32749602)
[»] chr8 (2 HSPs)
chr8 (17-164)||(44734094-44734241)
chr8 (17-161)||(44731786-44731930)
[»] chr5 (2 HSPs)
chr5 (17-164)||(32800260-32800407)
chr5 (17-162)||(32797950-32798095)
[»] chr1 (2 HSPs)
chr1 (17-163)||(1550099-1550245)
chr1 (17-162)||(9535199-9535344)
[»] chr3 (7 HSPs)
chr3 (17-162)||(28784457-28784602)
chr3 (17-162)||(48707750-48707901)
chr3 (41-164)||(48025194-48025318)
chr3 (41-164)||(48024083-48024207)
chr3 (18-115)||(48027348-48027448)
chr3 (41-164)||(48024634-48024758)
chr3 (100-164)||(5907716-5907781)
[»] chr4 (3 HSPs)
chr4 (17-162)||(22804553-22804700)
chr4 (17-115)||(7231019-7231118)
chr4 (100-162)||(44640115-44640179)
[»] chr6 (1 HSPs)
chr6 (41-120)||(6723446-6723525)
[»] chr7 (2 HSPs)
chr7 (41-121)||(13108906-13108986)
chr7 (41-162)||(13111199-13111321)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 45338660 - 45338513
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45338660 catagatatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 45338561  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaacact 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45338560 aacaacacaattaattattaaatcagaaaaatatcaatctccaacact 45338513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 45336348 - 45336202
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45336348 catagatatcattacctaggactcttacttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaat 45336249  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaacac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45336248 aacaacacaattaattattaaatcagaaaaatatcaatctccaacac 45336202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 14662418 - 14662318
Alignment:
Q  18 atagacatcattacctagg-actctt--acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaa 114  Q
    ||||||||||||||||||| ||| ||  |||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| ||||||||||||||||    
T  14662418 atagacatcattacctagggactgttttacttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgacagaaa 14662319  T
Q  115 a 115  Q
    |    
T  14662318 a 14662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 17648923 - 17648811
Alignment:
Q  51 aataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataa-ca--acacaattaattattaaatcagaaaaa 147  Q
    ||||||||||||||||| ||||||| |  |||||||||||||||||   ||||||||||||||||  | ||  |||||| ||||||  ||| ||||||||    
T  17648923 aataagcaacaatctaattatgacatt--aacttaaacaagcaacaagctaattatgacagaaaaacagcagcacacaagtaattaacaaaacagaaaaa 17648826  T
Q  148 tatcaatctccaaca 162  Q
    |||||||||||||||    
T  17648825 tatcaatctccaaca 17648811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 32749574 - 32749602
Alignment:
Q  167 tgttgtggttgatgtcacttcttgattac 195  Q
    |||||||||||||||||||||||||||||    
T  32749574 tgttgtggttgatgtcacttcttgattac 32749602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 44734241 - 44734094
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44734241 catagacatcattacctaggactcttacttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 44734142  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaacact 164  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  44734141 aacaacacaattaatttttaaatcagaaaaatatcaatctccaacact 44734094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 44731930 - 44731786
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44731930 catatacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 44731831  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaac 161  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  44731830 aacaacacaattaatttttaaatcagaaaaatatcaatctccaac 44731786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 32800407 - 32800260
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800407 catagatatcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 32800308  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaacact 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800307 aacaacacaattaattattaaatcagaaaaatatcaatctccaacact 32800260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 32798095 - 32797950
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32798095 catagatatcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 32797996  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaaca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32797995 aacaacacaattaattattaaatcagaaaaatatcaatctccaaca 32797950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 1550245 - 1550099
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  1550245 catagatatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaat 1550146  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaacac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1550145 aacaacacaattaattattaaatcagaaaaatatcaatctccaacac 1550099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 9535344 - 9535199
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9535344 catagaaatcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaaaat 9535245  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaaca 162  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  9535244 aacaacacaattaattattaaaccagaaaaatatcaatctccaaca 9535199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 28784602 - 28784457
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  28784602 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaattatgagagaaaat 28784503  T
Q  117 aacaacacaattaattattaaatcagaaaaatatcaatctccaaca 162  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  28784502 aacaacacaattaatttttaaatcagaaaaatatcaatctccaaca 28784457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 48707750 - 48707901
Alignment:
Q  17 catagacatcattacctaggactcttacttaccaaataagcaacaatctaactatgacactt------aaacttaaacaagcaacacattaattatgaca 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  48707750 catagacatcattacctaggactcttacttaccaaataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacattaattatgaca 48707849  T
Q  111 gaaaataacaacacaattaattattaaatcagaaaaatatcaatctccaaca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48707850 gaaaataacaacacaattaattattaaatcagaaaaatatcaatctccaaca 48707901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 48025194 - 48025318
Alignment:
Q  41 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca-caattaattattaaat 139  Q
    |||||||| |||||||||||||||||| ||||||| ||| || |||||||||||||| ||||||||||||||||| | ||  |  || ||||||  |||     
T  48025194 ttacttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaacaaaa 48025293  T
Q  140 cagaaaaatatcaatctccaacact 164  Q
    |||||||||||||||||||||||||    
T  48025294 cagaaaaatatcaatctccaacact 48025318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 48024083 - 48024207
Alignment:
Q  41 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca-caattaattattaaat 139  Q
    |||||||| |||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| | ||  |  || ||||||  |||     
T  48024083 ttacttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaattatgacagaaaacagcagtagaaaataattaacaaaa 48024182  T
Q  140 cagaaaaatatcaatctccaacact 164  Q
     ||||||||||||||||||||||||    
T  48024183 gagaaaaatatcaatctccaacact 48024207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 48027348 - 48027448
Alignment:
Q  18 atagacatcattacctagg-actctt--acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaa 114  Q
    ||||||||||||||||||| ||| ||  |||||| |||||||||||||||||| ||||||||||| || |||||||||||||| | ||||||| ||||||    
T  48027348 atagacatcattacctagggactgttttacttactaaataagcaacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaa 48027447  T
Q  115 a 115  Q
    |    
T  48027448 a 48027448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 48024634 - 48024758
Alignment:
Q  41 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca-caattaattattaaat 139  Q
    |||||||| |||||||||||||||||| ||||||||||| || |||||| ||||||  ||||||||||||||||| | ||  |  || ||||||  |||     
T  48024634 ttacttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtagaaaataattaacaaaa 48024733  T
Q  140 cagaaaaatatcaatctccaacact 164  Q
    || ||||||||||||||||||||||    
T  48024734 cataaaaatatcaatctccaacact 48024758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 5907781 - 5907716
Alignment:
Q  100 taattatgacagaaaataacaa-cacaattaattattaaatcagaaaaatatcaatctccaacact 164  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  5907781 taattatgacagaaaattacaaacacaagtaattattaaaccagaaaaatatcaatctccaacact 5907716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 22804700 - 22804553
Alignment:
Q  17 catagacatcattacctaggactctt--acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaa 114  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||||||||| |||||    
T  22804700 catagacatcattacctaggactcttttacttaccaaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaaa 22804601  T
Q  115 ataacaacacaattaattattaaatcagaaaaatatcaatctccaaca 162  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  22804600 ataacaacacaattaattattaaaccagaaaaatatcaatctccaaca 22804553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 7231019 - 7231118
Alignment:
Q  17 catagacatcattaccta-ggactc--ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaa 113  Q
    |||||||||||||||||| |||||   |||||||| ||||||||| |||||||| |||||||||  |||||||||||||||||   ||||||||||||||    
T  7231019 catagacatcattacctacggactactttacttactaaataagcagcaatctaattatgacact--aacttaaacaagcaacaatctaattatgacagaa 7231116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 44640179 - 44640115
Alignment:
Q  100 taattatgacagaaaat-aacaacacaattaatt-attaaatcagaaaaatatcaatctccaaca 162  Q
    ||||||||||||||||  |||||||||| | ||| |||||| |||||||||||||||||||||||    
T  44640179 taattatgacagaaaaacaacaacacaaatcatttattaaaccagaaaaatatcaatctccaaca 44640115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 6723525 - 6723446
Alignment:
Q  41 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 120  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  6723525 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaattatgacagaaaacaaca 6723446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 13108906 - 13108986
Alignment:
Q  41 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaa 121  Q
    |||||||| |||||||||||||||||| ||||||||||| |  |||||||||||||| ||||||||||||||||| |||||    
T  13108906 ttacttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaaacaacaa 13108986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 13111199 - 13111321
Alignment:
Q  41 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca-acacaattaattattaaat 139  Q
    |||||||| |||||||||||||||||| |||| |||||  || |||||||||||||| ||||||||||||||||| | ||   | || ||||||  |||     
T  13111199 ttacttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaacaaaa 13111298  T
Q  140 cagaaaaatatcaatctccaaca 162  Q
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T  13111299 cagaaaaatatcaatctccaaca 13111321  T

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