View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_33 (Length: 283)
Name: NF10625_low_33
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_33 |
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| [»] scaffold1444 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 17945277 - 17945530
Alignment:
| Q |
18 |
aatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgcctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17945277 |
aatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgcctt |
17945376 |
T |
|
| Q |
118 |
ggatttggttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaaccttttttagattcattctatga |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17945377 |
ggatttagttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaacctttttaagattcattctatga |
17945476 |
T |
|
| Q |
218 |
cacatcactgcgttgtctcctattttccttacttcctccaccacatattggtct |
271 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||| |||||||||| |
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| T |
17945477 |
cacatcactgcgttgtctcctatttttctcacttcctccaccatatattggtct |
17945530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 17956275 - 17956527
Alignment:
| Q |
18 |
aatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgcctt |
117 |
Q |
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|||||||||||||||||||||||||||| |||| |||||| || || |||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
17956275 |
aatggcaaacagggacagttccaggcttaactttgagaacatcgtaaagcacattaggatccatacctcgagtatcatggtgacagattgttagtgcctt |
17956374 |
T |
|
| Q |
118 |
ggatttggttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaaccttttttagattcattctatga |
217 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||| ||||| | ||||| |||||| |
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| T |
17956375 |
agatttggttccatcggatgccaccaatggaaccatgtaagttgttgtcgcattgacttggtggcaatagaatagaacttttttaaaattcaatctatgg |
17956474 |
T |
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| Q |
218 |
cacatcactgcgttgtctcctattttccttacttcctccaccacatattggtc |
270 |
Q |
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|||||||||||||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
17956475 |
cacatcactgcgttgtctcctattttattcacttcttccaccacatattggtc |
17956527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 17107641 - 17107400
Alignment:
| Q |
18 |
aatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgcctt |
117 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||||| |||||| || | || ||||| ||| ||||||||||||||||| || |||||||||||||| |
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| T |
17107641 |
aatggcaaatagggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgcctt |
17107542 |
T |
|
| Q |
118 |
ggatttggttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaaccttttttagattcattctatga |
217 |
Q |
| |
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| ||| ||||||||||| ||||||||| | ||||||||| ||||| || || | ||||||||||| ||| | | | ||| | ||||| ||||||| |
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| T |
17107541 |
agctttagttccatcagaagccaccaatagcaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatga |
17107442 |
T |
|
| Q |
218 |
cacatcactgcgttgtctcctattttccttacttcctccacc |
259 |
Q |
| |
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||||||||||| |||||||| |||||| | ||||| |||||| |
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| T |
17107441 |
cacatcactgctttgtctccaattttcttcacttcatccacc |
17107400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 271
Target Start/End: Original strand, 17986454 - 17986690
Alignment:
| Q |
35 |
gttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgccttggatttggttccatcag |
134 |
Q |
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|||||||||||||||| |||||||||||| |||| || ||||||||||||||| || ||||||||||| || ||||||||||| | ||| |||||||||| |
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| T |
17986454 |
gttccaggcttgactttgagaacttcataaagcacatcaggatccatacctctcgtgtcatggtggcatattgttagtgccttcgctttagttccatcag |
17986553 |
T |
|
| Q |
135 |
aggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaaccttttttagattcattctatgacacatcactgcgttgtc |
234 |
Q |
| |
|
||||||| || ||||| ||||| || | ||| || |||| ||||||||||| ||| |||| | | | ||| | | ||||||||||||| || ||||| |
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| T |
17986554 |
aggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaataaaatacaacttgatcgaaatttagtttatgacacatcacggctttgtc |
17986653 |
T |
|
| Q |
235 |
tcctattttccttacttcctccaccacatattggtct |
271 |
Q |
| |
|
||| |||||| | ||||||| || | |||||||||| |
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| T |
17986654 |
tccaattttcttcacttcctgtactatatattggtct |
17986690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 17117189 - 17117430
Alignment:
| Q |
18 |
aatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgcctt |
117 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||||| | |||||| || ||||| ||||||||||||||||||||| || ||||| | |||||| |
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|
| T |
17117189 |
aatggcaaatagggacagttcctggcttgactttgagaaccttatagagatgatcaggattcatacctcttgtatcatggtgacaaatagtcactgcctt |
17117288 |
T |
|
| Q |
118 |
ggatttggttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaaccttttttagattcattctatga |
217 |
Q |
| |
|
| ||| ||||||||||| ||||||||||| ||||||||| ||||| || || | ||||| ||| | ||| || ||||| | |||||||| |||| |
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| T |
17117289 |
agctttagttccatcagaagccaccaatggcaccatgtaaactgttgttgcattaacttggtgacaagaaaatataatatttttgaaattcattcgatga |
17117388 |
T |
|
| Q |
218 |
cacatcactgcgttgtctcctattttccttacttcctccacc |
259 |
Q |
| |
|
|||| ||| ||||||||||| |||||| | ||||| |||||| |
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|
| T |
17117389 |
cacaacaccgcgttgtctccaattttcttcacttcgtccacc |
17117430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 82 - 270
Target Start/End: Complemental strand, 17004395 - 17004207
Alignment:
| Q |
82 |
acctcttgtatcatggtggcagatagttagtgccttggatttggttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtgg |
181 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | |||||||||||| | ||||||||||| ||||||||||| || || || || | ||||| |
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|
| T |
17004395 |
acctcttgtatcatggtggcagacagttagtgccttagctttggttccatctaaagccaccaatggcaccatgtaagttgtagttgcattaacttggtga |
17004296 |
T |
|
| Q |
182 |
caatagaatccaaccttttttagattcattctatgacacatcactgcgttgtctcctattttccttacttcctccaccacatattggtc |
270 |
Q |
| |
|
||||| ||| |||| ||||| | ||| | ||||||||||||||| | |||||||| ||||| | ||||| ||||||||||||||||| |
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|
| T |
17004295 |
caataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaatttttttcacttcatccaccacatattggtc |
17004207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 17999224 - 17999477
Alignment:
| Q |
18 |
aatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgcctt |
117 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||| ||||||||||| ||||| ||| |||| |||||||||||| |||||||| || || | ||| || |
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|
| T |
17999224 |
aatggcagacagggatagttcctggcttgactttgagaacttcatcgagcaaattcggattcatacctcttgtgtcatggtgacaagcagccaatgcatt |
17999323 |
T |
|
| Q |
118 |
ggatttggttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaaccttttttagattcattctatga |
217 |
Q |
| |
|
||| ||||||||||||||| ||| || ||||||||||| |||| || || | ||||| ||||| ||| |||| || | | |||||||| |||| |
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| T |
17999324 |
aactttacttccatcagaggccaacaaagggaccatgtaagttgttgatgcattcacttggtgacaataaaatacaactttctcgaaattcattcgatga |
17999423 |
T |
|
| Q |
218 |
cacatcactgcgttgtctcctattttccttacttcctccaccacatattggtct |
271 |
Q |
| |
|
||||| ||| | |||||| | |||||||||||||| || || |||||||||||| |
|
|
| T |
17999424 |
cacattactcctttgtctgcaattttccttacttcttctactacatattggtct |
17999477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 17258193 - 17258287
Alignment:
| Q |
176 |
tggtggcaatagaatccaaccttttttagattcattctatgacacatcactgcgttgtctcctattttccttacttcctccaccacatattggtc |
270 |
Q |
| |
|
|||||||||| |||| |||| |||| | ||||| |||||||||||||||||| |||||||| | ||| | ||||||||||||||||||||||| |
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|
| T |
17258193 |
tggtggcaattgaatacaactttttcgaaattcaatctatgacacatcactgcattgtctccaacttttttcacttcctccaccacatattggtc |
17258287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 62 - 1
Alignment:
| Q |
18 |
aatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatcc |
79 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| ||| ||||||| || ||||||| |
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| T |
62 |
aatggcaaatagggacagttccaggcttgactttgagaatttcgtagagcacatcaggatcc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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