View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_4 (Length: 488)
Name: NF10625_low_4
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 3527491 - 3527955
Alignment:
| Q |
17 |
actaagctgattacactcatgctaattactaccattaacacccaaatcagcatcacccgtgtacacattttgccactattcattttgttataattaatga |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3527491 |
actaagctaattacactcatgctaattactaccattaacacccaaatcagcatcacccgtgtacacattttgccattattcattttgttataattaatga |
3527590 |
T |
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| Q |
117 |
gacaacgagaccttaattttgttccacttttcctacgtgaaaaaatgtgtgtgtgt--actatataggttgctttggtttaannnnnnnnctttctttct |
214 |
Q |
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| T |
3527591 |
gacaacgagaccttaattttgttccacttttcctacgtgaaaaaatgtgtgtgtgtgtactatataggttgctttggtttaattttttttcttt--ttct |
3527688 |
T |
|
| Q |
215 |
aactatttatttgagttctattttggtttaatatacatatagtttccattgcctcactggaaaggtttattttcattgcatttgactatattaatcaacg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527689 |
aactatttatttgagttctattttggtttaatatacatatagtttccattgcctcactggaaaggtttattttcattgcatttgactatattaatcaacg |
3527788 |
T |
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| Q |
315 |
aggtgactctttatatccctagagtatagtcaatggtttctttctctctgattagtgatccatatctctcaaatcttcaatcttcattttcttttgcgag |
414 |
Q |
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| T |
3527789 |
aggtgactctttatatccctagagtatagtcaatggtttctttctctctgattagtgatccatatctctcaaatcttcaatcttcattttcttttgcgag |
3527888 |
T |
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| Q |
415 |
nnnnnnnnnnnggagtcttttcgagttgcgttaggagcaggtaattagatagctgggatctctgctt |
481 |
Q |
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| T |
3527889 |
aaaaaaagaaaggagtcttttcgagttgcgttaggagcaggtaattagatagctgggatctttgctt |
3527955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 3531963 - 3532016
Alignment:
| Q |
97 |
cattttgttataattaatgagacaacgagaccttaattttgttccacttttccta |
151 |
Q |
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| T |
3531963 |
cattttgttgtaattcatgagactacg-gaccttaattttgttccacttttccta |
3532016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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