View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_41 (Length: 257)
Name: NF10625_low_41
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 49 - 241
Target Start/End: Original strand, 24868180 - 24868372
Alignment:
| Q |
49 |
tatcataaggtatatgtcatcatttaaactacgttgcttaactcatttagtgagaagagacttgtatattgtttttgttggtgatgagtctaccgttaat |
148 |
Q |
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| T |
24868180 |
tatcataaggtatatgtcatcatttaaactacgttgcttaactcatctagtgagaagagacttgtatattgtttttgttggtgatgagtctaccgttaat |
24868279 |
T |
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| Q |
149 |
caatgctcttttgatgtcaatactgaatagtggttcagtacatctaaaacatttgtttgctttatgttgaattttaagtgtcaagaataaatg |
241 |
Q |
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| T |
24868280 |
caatgctcttttgatgtcaatactgaatagtggttcagtacatctcaaacatttgtttgctttatattgaattttaagtgtcaagaataaatg |
24868372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24868111 - 24868157
Alignment:
| Q |
1 |
aataagtcaaactataagccaaccattaagatagatttagagataga |
47 |
Q |
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| T |
24868111 |
aataagtaaaactataagccaaccattaagatagatttagaggtaga |
24868157 |
T |
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