View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_44 (Length: 251)
Name: NF10625_low_44
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2944002 - 2943873
Alignment:
| Q |
1 |
tataattaaagcaatgttatgcacactcgttaaagtgcaccctcttcaattcaaataaatccaaatatccaattaaggagaaaacaataacttccttctt |
100 |
Q |
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| T |
2944002 |
tataattaacgcaatgttatgcacactcgttaaagtgcaccctcttcaattcaaataaatccaaatatccaattaaggagaaaacaataacttccttctt |
2943903 |
T |
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| Q |
101 |
cagcattaatgtaataggatcacactcgaa |
130 |
Q |
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| T |
2943902 |
tagcattaatgtaataggatcacactcgaa |
2943873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 2943860 - 2943782
Alignment:
| Q |
159 |
accaagacatcatcacagtctcttaatacgtccaagtctttctagcgcaagaataaataggatcaccttgtctaagtcc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2943860 |
accaagacatcatcacagtctcttaatacgtccaagtctttctagcgcaagaataaattggatcaccttgtctaagtcc |
2943782 |
T |
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