View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_50 (Length: 247)
Name: NF10625_low_50
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9019187 - 9019007
Alignment:
| Q |
1 |
taccgtgtcttgtgcattttttattttaacatctaataaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtc |
100 |
Q |
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| T |
9019187 |
taccgtgtcttgtgcattttttattttaacatctaataaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtc |
9019088 |
T |
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| Q |
101 |
aaattcatatgtatagttgcaactaatcctttgttattcttgtgattctttttcatagcacttaattcttcttctttcttt |
181 |
Q |
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| T |
9019087 |
aaattcatatgtatagttgcaactaatccttttttaatcttgtgattctttttcatagcactcaattcttcttctttcttt |
9019007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9028589 - 9028409
Alignment:
| Q |
1 |
taccgtgtcttgtgcattttttattttaacatctaataaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtc |
100 |
Q |
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| T |
9028589 |
taccgtgtcttgtgcattttttattttaacatctaataaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtc |
9028490 |
T |
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| Q |
101 |
aaattcatatgtatagttgcaactaatcctttgttattcttgtgattctttttcatagcacttaattcttcttctttcttt |
181 |
Q |
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| T |
9028489 |
aaattcatatgtatagttgcaactaatccttttttaatcttgtgattctttttcatagcactcaattcttcttctttcttt |
9028409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 8993869 - 8993727
Alignment:
| Q |
39 |
aacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatcctttgttatt |
138 |
Q |
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| T |
8993869 |
aacagttgcctaagtagaagaacgaggtggagcaccctcacttccatttgagtcttgaggtcaaattcatatgcatagttgcaactaatcctttgttaat |
8993770 |
T |
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| Q |
139 |
cttgtgattctttttcatagcacttaattcttcttctttcttt |
181 |
Q |
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| T |
8993769 |
attgtgattctttttcatagaactcaattcttcttctttcttt |
8993727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 9014616 - 9014479
Alignment:
| Q |
37 |
taaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatcctttgtta |
136 |
Q |
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| T |
9014616 |
taaacagttgcttaagtagaagaaataggtgcagcaccctcactgccacttgag-------gtcaaattcatatctatagttgcaactaatcctttgtta |
9014524 |
T |
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| Q |
137 |
ttcttgtgattctttttcatagcacttaattcttcttctttcttt |
181 |
Q |
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| T |
9014523 |
ttcttatgattcttttccatagcactcaattcttcttctttcttt |
9014479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 9017971 - 9017929
Alignment:
| Q |
138 |
tcttgtgattctttttcatagcacttaattcttcttctttctt |
180 |
Q |
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| T |
9017971 |
tcttgtgattctttttcatagcacttaattcttcttctttctt |
9017929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 8987739 - 8987692
Alignment:
| Q |
134 |
ttattcttgtgattctttttcatagcacttaattcttcttctttcttt |
181 |
Q |
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| T |
8987739 |
ttattcttgtgattctttttcgtagcacttatttcttcttctttcttt |
8987692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 45555015 - 45555068
Alignment:
| Q |
127 |
tcctttgttattcttgtgattctttttcatagcacttaattcttcttctttctt |
180 |
Q |
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|||| ||||||||||| | ||||||| ||||||| |||||||| |||||||||| |
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| T |
45555015 |
tcctctgttattcttgagcttcttttccatagcatttaattctgcttctttctt |
45555068 |
T |
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