View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10625_low_54 (Length: 242)

Name: NF10625_low_54
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10625_low_54
NF10625_low_54
[»] chr2 (20 HSPs)
chr2 (6-242)||(39221221-39221457)
chr2 (7-211)||(39390849-39391053)
chr2 (33-242)||(39389516-39389725)
chr2 (33-217)||(39198356-39198540)
chr2 (33-217)||(39192676-39192860)
chr2 (93-185)||(39415854-39415946)
chr2 (93-183)||(39136776-39136866)
chr2 (125-201)||(39221907-39221983)
chr2 (125-201)||(39222117-39222193)
chr2 (33-132)||(39603044-39603143)
chr2 (94-184)||(39222464-39222554)
chr2 (111-211)||(39415108-39415208)
chr2 (94-146)||(39458705-39458757)
chr2 (138-225)||(39192542-39192629)
chr2 (138-225)||(39198222-39198309)
chr2 (144-210)||(39415451-39415517)
chr2 (33-83)||(39451804-39451854)
chr2 (182-222)||(2361535-2361575)
chr2 (190-222)||(39221162-39221194)
chr2 (143-199)||(39603028-39603084)
[»] chr5 (1 HSPs)
chr5 (33-211)||(33560406-33560584)
[»] chr7 (1 HSPs)
chr7 (33-173)||(19807077-19807217)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 39221221 - 39221457
Alignment:
Q  6 caaaggagaaggaacttgaaggccgtgtggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggaca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39221221 caaaggagaaggaacttgaaggccgtgtggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggaca 39221320  T
Q  106 ggttgaggaacttgactccaaagagaagcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaa 205  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39221321 ggttgaggaacttgactccaaagagaagcaacttgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaa 39221420  T
Q  206 tcaaaaaagaaggaattagagttgaaagataacgaac 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  39221421 tcaaaaaagaaggaattagagttgaaagataacgaac 39221457  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 39391053 - 39390849
Alignment:
Q  7 aaaggagaaggaacttgaaggccgtgtggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacag 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||| |||     
T  39391053 aaaggagaaggaatttgaaggccgtgtggaatctaaaaagaagcatttcgaaggcatgatggaggagctcaaatcaagaatgaggtctttgaaagaacaa 39390954  T
Q  107 gttgaggaacttgactccaaagagaagcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaat 206  Q
    ||||||||||||||||| |||||||||||||| |||   ||| | || ||||| |||||| ||||| |  |||||||||  ||||||||||||||||| |    
T  39390953 gttgaggaacttgactctaaagagaagcaacttgatcatcaaattaaagagctagaatctaaaaaggactactttgaaaaacaggtgaaggagtttgagt 39390854  T
Q  207 caaaa 211  Q
    |||||    
T  39390853 caaaa 39390849  T

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Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 39389725 - 39389516
Alignment:
Q  33 tggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaa 132  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||   |||||||| |||  || ||||| ||||||||||||||||    
T  39389725 tggaatctaaaaagaagcatttcgaaagcatgatggtggagctcaaatcaaaattgaggctattgaaagtacaatttcaggaatttgactccaaagagaa 39389626  T
Q  133 gcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaaaagaaggaattagagttgaaa 232  Q
    |||||| |||||||||||||||||| |||||||| ||||| | ||||||||||| || ||||  |||||||| ||||| |||||||||| | |||  |||    
T  39389625 gcaacttgatggccaagtgaaggaggtggaatctaaaaaggaccactttgaaagacaagtgatagagtttgagtcaaagaagaaggaatcacagtcaaaa 39389526  T
Q  233 gataacgaac 242  Q
    ||||||||||    
T  39389525 gataacgaac 39389516  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 217
Target Start/End: Complemental strand, 39198540 - 39198356
Alignment:
Q  33 tggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaa 132  Q
    |||||||||||| ||||||| | | | |||||| | ||||||| |||||||   ||||  |||||| |||||| ||| ||||| || |||| ||||||||    
T  39198540 tggaatctaaaaggaagcatatagtaggcatgaggaaggagctaaaatcaactgtgaggccattgataggacaagttaaggaattttactctaaagagaa 39198441  T
Q  133 gcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaaaagaag 217  Q
    |||||| ||| ||||| ||||||||||||||||| ||||||| |  |||||| | || |||||||||||||| |||||| |||||    
T  39198440 gcaacttgatagccaactgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaaggagtttgagtcaaaagagaag 39198356  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 217
Target Start/End: Complemental strand, 39192860 - 39192676
Alignment:
Q  33 tggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaa 132  Q
    |||||||||||| ||||||| | | | |||||| | ||||||| |||| ||   ||||  |||||| |||||| ||| ||||| || |||| ||||||||    
T  39192860 tggaatctaaaaggaagcatatagtaggcatgaggaaggagctaaaataaactgtgaggccattgataggacaagttaaggaattttactctaaagagaa 39192761  T
Q  133 gcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaaaagaag 217  Q
    |||||| ||| ||||| ||||||||||||||||| ||||||| |  |||||| | || |||||||||||||| |||||| |||||    
T  39192760 gcaacttgatagccaactgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaaggagtttgagtcaaaagagaag 39192676  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 39415946 - 39415854
Alignment:
Q  93 cattgaaaggacaggttgaggaacttgactccaaagagaagcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaa 185  Q
    |||||||||||||| || |||||||||  || |||||||||||||||||||||||||| ||||| ||||||||| ||||||| || |||||||    
T  39415946 cattgaaaggacagtttaaggaacttgcttctaaagagaagcaactcgatggccaagtaaaggaactggaatctaaaaagaagcagtttgaaa 39415854  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 39136776 - 39136866
Alignment:
Q  93 cattgaaaggacaggttgaggaacttgactccaaagagaagcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttga 183  Q
    |||||||||||||  || ||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||| ||||||| || |||||    
T  39136776 cattgaaaggacaaattaaggaacttgcctctaaagagaagcaactgaatggccaagtgaaggagctggaatctaaaaagaaccagtttga 39136866  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 39221907 - 39221983
Alignment:
Q  125 aaagagaagcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtt 201  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||||| |  |||||||| || |||||||||||    
T  39221907 aaagagaagcaacttgatagccaagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagtt 39221983  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 39222117 - 39222193
Alignment:
Q  125 aaagagaagcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtt 201  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||||| |  |||||||| || |||||||||||    
T  39222117 aaagagaagcaacttgatagccaagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagtt 39222193  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 39603044 - 39603143
Alignment:
Q  33 tggaatctaaaaagaagcatttcgaaagc-atgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagaga 131  Q
    |||||||||||||||||||||| |||||| ||| |||||||||||| |||||   || |   |||||||||||||||| |||||||||| ||||||||||    
T  39603044 tggaatctaaaaagaagcattttgaaagccatg-tggaggagctcacatcaaatctgtggcaattgaaaggacaggttaaggaacttgaatccaaagaga 39603142  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 39222464 - 39222554
Alignment:
Q  94 attgaaaggacaggttgaggaacttgactccaaagagaagcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaa 184  Q
    |||||||||||||||| ||||| |||| || ||||||||| || | ||||||| |||||||||| | |||||| || || || ||||||||    
T  39222464 attgaaaggacaggttaaggaaattgagtctaaagagaagaaatttgatggccgagtgaaggagtttgaatctaaagaggatgactttgaa 39222554  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 39415208 - 39415108
Alignment:
Q  111 aggaacttgactccaaagagaagcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaa 210  Q
    |||| ||||| || |||||||||||||  || || | ||||||||||||||||||  ||||||| || || ||||| ||  |||||||| ||||||||||    
T  39415208 aggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagctggaatcagaaaagaagcatttcgaaagccaactgaaggagcttgaatcaaa 39415109  T
Q  211 a 211  Q
    |    
T  39415108 a 39415108  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 39458705 - 39458757
Alignment:
Q  94 attgaaaggacaggttgaggaacttgactccaaagagaagcaactcgatggcc 146  Q
    |||||||||||| ||| |||||||||| || |||||||||||||| |||||||    
T  39458705 attgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatggcc 39458757  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 39192629 - 39192542
Alignment:
Q  138 tcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaaaagaaggaattaga 225  Q
    |||| |||||||||||||| || ||||||  |||||| || ||| ||||||| ||| |||||||  |||||||| ||||| |||||||    
T  39192629 tcgaaggccaagtgaaggaacttgaatctagaaagaagcattttaaaagtcaagtggaggagttcaaatcaaaagagaagcaattaga 39192542  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 39198309 - 39198222
Alignment:
Q  138 tcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaaaagaaggaattaga 225  Q
    |||| |||||||||||||| || ||||||  |||||| || ||| ||||||| ||| |||||||  |||||||| ||||| |||||||    
T  39198309 tcgaaggccaagtgaaggaacttgaatctagaaagaagcattttaaaagtcaagtggaggagttcaaatcaaaagagaagcaattaga 39198222  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 39415517 - 39415451
Alignment:
Q  144 gccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaa 210  Q
    ||||||||| ||||||||||||| ||||||| || |||||||| || || |||||||| || |||||    
T  39415517 gccaagtgagggagctggaatctaaaaagaagcaatttgaaagacaagtaaaggagttggagtcaaa 39415451  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 39451804 - 39451854
Alignment:
Q  33 tggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaa 83  Q
    |||||||||||||||||||||| ||||||    ||||||||||||||||||    
T  39451804 tggaatctaaaaagaagcattttgaaagccaagtggaggagctcaaatcaa 39451854  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 2361535 - 2361575
Alignment:
Q  182 gaaagtcaggtgaaggagtttgaatcaaaaaagaaggaatt 222  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  2361535 gaaaggcaggtgaaggagcttgaatcaaaaaagaagcaatt 2361575  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 39221162 - 39221194
Alignment:
Q  190 ggtgaaggagtttgaatcaaaaaagaaggaatt 222  Q
    |||||||||||||||||||||| ||||||||||    
T  39221162 ggtgaaggagtttgaatcaaaacagaaggaatt 39221194  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 39603028 - 39603084
Alignment:
Q  143 ggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggag 199  Q
    |||||||||| ||||||||||||| ||||||| || |||||||| || ||| |||||    
T  39603028 ggccaagtgacggagctggaatctaaaaagaagcattttgaaagccatgtggaggag 39603084  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 33560406 - 33560584
Alignment:
Q  33 tggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaa 132  Q
    |||||| ||||  ||||||||||||||||||| ||||||||||||||||||   |||| || ||||||| |||  || | |||||||| || ||||||||    
T  33560406 tggaatataaagcgaagcatttcgaaagcatggtggaggagctcaaatcaaaattgaggtcgttgaaagaacaacttcaagaacttgattctaaagagaa 33560505  T
Q  133 gcaactcgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaa 211  Q
    |||||| ||||| || |||||||||||||||||| ||||||| ||||||||||| || || ||||||||||| ||||||    
T  33560506 gcaacttgatggtcaggtgaaggagctggaatctaaaaagaaccactttgaaagacaagttaaggagtttgagtcaaaa 33560584  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 19807077 - 19807217
Alignment:
Q  33 tggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaa 132  Q
    ||||||||||| ||| ||||||| |||||  | |||||||||||||  |||   |||   |||||||||||||  || |||| |||| ||| ||||||||    
T  19807077 tggaatctaaagagaggcatttcaaaagcgaggtggaggagctcaatacaaaattgatgccattgaaaggacaacttaaggagcttgcctctaaagagaa 19807176  T
Q  133 gcaactcgatggccaagtgaaggagctggaatctcaaaaga 173  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  19807177 gcaactcaatggccaagtgaaggagctggaatctaaaaaga 19807217  T

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